Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC17.4■□□□□ 0.38
VSX1Q9NZR4 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
VSX1Q9NZR4 AC092368.3-202ENST00000574180 1591 ntBASIC17.4■□□□□ 0.38
VSX1Q9NZR4 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VSX1Q9NZR4 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
VSX1Q9NZR4 AC124283.5-201ENST00000624661 1809 ntBASIC17.4■□□□□ 0.38
VSX1Q9NZR4 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
VSX1Q9NZR4 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC17.39■□□□□ 0.38
VSX1Q9NZR4 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC17.39■□□□□ 0.38
VSX1Q9NZR4 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
VSX1Q9NZR4 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC17.39■□□□□ 0.38
VSX1Q9NZR4 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VSX1Q9NZR4 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
VSX1Q9NZR4 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC17.39■□□□□ 0.37
VSX1Q9NZR4 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC17.39■□□□□ 0.37
VSX1Q9NZR4 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VSX1Q9NZR4 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VSX1Q9NZR4 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
VSX1Q9NZR4 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC17.39■□□□□ 0.37
VSX1Q9NZR4 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC17.39■□□□□ 0.37
VSX1Q9NZR4 AC060766.5-201ENST00000590539 871 ntBASIC17.39■□□□□ 0.37
VSX1Q9NZR4 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VSX1Q9NZR4 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VSX1Q9NZR4 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
VSX1Q9NZR4 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
VSX1Q9NZR4 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
VSX1Q9NZR4 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VSX1Q9NZR4 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VSX1Q9NZR4 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
VSX1Q9NZR4 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
VSX1Q9NZR4 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VSX1Q9NZR4 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC17.38■□□□□ 0.37
VSX1Q9NZR4 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VSX1Q9NZR4 PTGES2-AS1-201ENST00000443493 2100 ntBASIC17.38■□□□□ 0.37
VSX1Q9NZR4 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VSX1Q9NZR4 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VSX1Q9NZR4 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
VSX1Q9NZR4 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
VSX1Q9NZR4 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
VSX1Q9NZR4 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VSX1Q9NZR4 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VSX1Q9NZR4 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC17.38■□□□□ 0.37
VSX1Q9NZR4 SLC29A4P2-201ENST00000504749 1089 ntBASIC17.38■□□□□ 0.37
VSX1Q9NZR4 PNMA6B-201ENST00000538162 1200 ntBASIC17.38■□□□□ 0.37
VSX1Q9NZR4 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC17.38■□□□□ 0.37
VSX1Q9NZR4 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC17.38■□□□□ 0.37
VSX1Q9NZR4 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC17.38■□□□□ 0.37
VSX1Q9NZR4 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC17.38■□□□□ 0.37
VSX1Q9NZR4 GAMT-205ENST00000640762 751 ntTSL 5 BASIC17.38■□□□□ 0.37
VSX1Q9NZR4 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC17.38■□□□□ 0.37
VSX1Q9NZR4 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VSX1Q9NZR4 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VSX1Q9NZR4 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VSX1Q9NZR4 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VSX1Q9NZR4 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VSX1Q9NZR4 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC17.38■□□□□ 0.37
VSX1Q9NZR4 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
VSX1Q9NZR4 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC17.37■□□□□ 0.37
VSX1Q9NZR4 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
VSX1Q9NZR4 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
VSX1Q9NZR4 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VSX1Q9NZR4 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VSX1Q9NZR4 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
VSX1Q9NZR4 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
VSX1Q9NZR4 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VSX1Q9NZR4 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC17.37■□□□□ 0.37
VSX1Q9NZR4 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC17.37■□□□□ 0.37
VSX1Q9NZR4 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VSX1Q9NZR4 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VSX1Q9NZR4 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
VSX1Q9NZR4 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
VSX1Q9NZR4 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC17.37■□□□□ 0.37
VSX1Q9NZR4 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC17.37■□□□□ 0.37
VSX1Q9NZR4 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC17.37■□□□□ 0.37
VSX1Q9NZR4 REXO2-208ENST00000539754 791 ntTSL 2 BASIC17.37■□□□□ 0.37
VSX1Q9NZR4 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VSX1Q9NZR4 AL138781.1-201ENST00000566567 1274 ntBASIC17.37■□□□□ 0.37
VSX1Q9NZR4 AC083880.1-201ENST00000608266 535 ntBASIC17.37■□□□□ 0.37
VSX1Q9NZR4 GXYLT1P5-201ENST00000614548 1189 ntBASIC17.37■□□□□ 0.37
VSX1Q9NZR4 AL121906.2-201ENST00000621597 723 ntBASIC17.37■□□□□ 0.37
VSX1Q9NZR4 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC17.37■□□□□ 0.37
VSX1Q9NZR4 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.37■□□□□ 0.37
VSX1Q9NZR4 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VSX1Q9NZR4 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VSX1Q9NZR4 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VSX1Q9NZR4 AC098818.2-201ENST00000564925 2320 ntBASIC17.37■□□□□ 0.37
VSX1Q9NZR4 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VSX1Q9NZR4 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC17.36■□□□□ 0.37
VSX1Q9NZR4 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VSX1Q9NZR4 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC17.36■□□□□ 0.37
VSX1Q9NZR4 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VSX1Q9NZR4 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VSX1Q9NZR4 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC17.36■□□□□ 0.37
VSX1Q9NZR4 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VSX1Q9NZR4 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VSX1Q9NZR4 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC17.36■□□□□ 0.37
VSX1Q9NZR4 ABHD17AP6-201ENST00000458502 1044 ntBASIC17.36■□□□□ 0.37
VSX1Q9NZR4 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC17.36■□□□□ 0.37
VSX1Q9NZR4 AC098934.4-201ENST00000564127 592 ntBASIC17.36■□□□□ 0.37
VSX1Q9NZR4 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms