Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 AC092720.2-201ENST00000602388 1665 ntBASIC24.85■■□□□ 1.57
USP42Q9H9J4 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
USP42Q9H9J4 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
USP42Q9H9J4 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
USP42Q9H9J4 LINC01006-201ENST00000333319 2292 ntBASIC24.85■■□□□ 1.57
USP42Q9H9J4 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC24.85■■□□□ 1.57
USP42Q9H9J4 AC092338.2-201ENST00000568827 1415 ntBASIC24.85■■□□□ 1.57
USP42Q9H9J4 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC24.85■■□□□ 1.57
USP42Q9H9J4 COX11P1-201ENST00000489116 835 ntBASIC24.85■■□□□ 1.57
USP42Q9H9J4 DBP-204ENST00000599385 709 ntTSL 3 BASIC24.85■■□□□ 1.57
USP42Q9H9J4 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC24.85■■□□□ 1.57
USP42Q9H9J4 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
USP42Q9H9J4 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
USP42Q9H9J4 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
USP42Q9H9J4 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
USP42Q9H9J4 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC24.84■■□□□ 1.57
USP42Q9H9J4 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
USP42Q9H9J4 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
USP42Q9H9J4 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
USP42Q9H9J4 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC24.84■■□□□ 1.57
USP42Q9H9J4 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC24.84■■□□□ 1.57
USP42Q9H9J4 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC24.84■■□□□ 1.57
USP42Q9H9J4 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC24.84■■□□□ 1.57
USP42Q9H9J4 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC24.84■■□□□ 1.57
USP42Q9H9J4 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC24.84■■□□□ 1.57
USP42Q9H9J4 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC24.84■■□□□ 1.57
USP42Q9H9J4 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC24.84■■□□□ 1.57
USP42Q9H9J4 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC24.84■■□□□ 1.57
USP42Q9H9J4 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC24.84■■□□□ 1.57
USP42Q9H9J4 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC24.84■■□□□ 1.57
USP42Q9H9J4 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC24.84■■□□□ 1.57
USP42Q9H9J4 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC24.84■■□□□ 1.57
USP42Q9H9J4 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC24.84■■□□□ 1.57
USP42Q9H9J4 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC24.84■■□□□ 1.57
USP42Q9H9J4 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC24.83■■□□□ 1.57
USP42Q9H9J4 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
USP42Q9H9J4 AC092667.1-201ENST00000434301 2586 ntBASIC24.83■■□□□ 1.57
USP42Q9H9J4 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC24.83■■□□□ 1.57
USP42Q9H9J4 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
USP42Q9H9J4 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC24.83■■□□□ 1.57
USP42Q9H9J4 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC24.83■■□□□ 1.56
USP42Q9H9J4 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC24.83■■□□□ 1.56
USP42Q9H9J4 KRT126P-201ENST00000549467 1181 ntBASIC24.83■■□□□ 1.56
USP42Q9H9J4 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC24.83■■□□□ 1.56
USP42Q9H9J4 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC24.83■■□□□ 1.56
USP42Q9H9J4 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC24.83■■□□□ 1.56
USP42Q9H9J4 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC24.83■■□□□ 1.56
USP42Q9H9J4 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC24.82■■□□□ 1.56
USP42Q9H9J4 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC24.82■■□□□ 1.56
USP42Q9H9J4 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC24.82■■□□□ 1.56
USP42Q9H9J4 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC24.82■■□□□ 1.56
USP42Q9H9J4 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC24.82■■□□□ 1.56
USP42Q9H9J4 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
USP42Q9H9J4 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC24.82■■□□□ 1.56
USP42Q9H9J4 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC24.82■■□□□ 1.56
USP42Q9H9J4 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC24.82■■□□□ 1.56
USP42Q9H9J4 AC092647.4-201ENST00000457211 535 ntBASIC24.82■■□□□ 1.56
USP42Q9H9J4 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC24.82■■□□□ 1.56
USP42Q9H9J4 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC24.82■■□□□ 1.56
USP42Q9H9J4 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC24.82■■□□□ 1.56
USP42Q9H9J4 AL023803.3-201ENST00000615559 522 ntBASIC24.82■■□□□ 1.56
USP42Q9H9J4 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC24.82■■□□□ 1.56
USP42Q9H9J4 AC141257.4-201ENST00000634557 245 ntBASIC24.82■■□□□ 1.56
USP42Q9H9J4 AC136944.6-201ENST00000634818 245 ntBASIC24.82■■□□□ 1.56
USP42Q9H9J4 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
USP42Q9H9J4 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
USP42Q9H9J4 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
USP42Q9H9J4 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
USP42Q9H9J4 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC24.81■■□□□ 1.56
USP42Q9H9J4 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC24.81■■□□□ 1.56
USP42Q9H9J4 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
USP42Q9H9J4 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC24.81■■□□□ 1.56
USP42Q9H9J4 PHGDH-210ENST00000641115 1638 ntBASIC24.81■■□□□ 1.56
USP42Q9H9J4 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
USP42Q9H9J4 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
USP42Q9H9J4 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
USP42Q9H9J4 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
USP42Q9H9J4 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC24.81■■□□□ 1.56
USP42Q9H9J4 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
USP42Q9H9J4 Z85996.1-201ENST00000494644 937 ntBASIC24.81■■□□□ 1.56
USP42Q9H9J4 FAM86EP-206ENST00000510506 987 ntBASIC24.81■■□□□ 1.56
USP42Q9H9J4 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC24.81■■□□□ 1.56
USP42Q9H9J4 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
USP42Q9H9J4 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC24.81■■□□□ 1.56
USP42Q9H9J4 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC24.81■■□□□ 1.56
USP42Q9H9J4 AL121956.5-201ENST00000625261 221 ntBASIC24.81■■□□□ 1.56
USP42Q9H9J4 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
USP42Q9H9J4 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
USP42Q9H9J4 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC24.8■■□□□ 1.56
USP42Q9H9J4 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
USP42Q9H9J4 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
USP42Q9H9J4 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
USP42Q9H9J4 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC24.8■■□□□ 1.56
USP42Q9H9J4 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
USP42Q9H9J4 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC24.8■■□□□ 1.56
USP42Q9H9J4 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
USP42Q9H9J4 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC24.8■■□□□ 1.56
USP42Q9H9J4 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC24.8■■□□□ 1.56
USP42Q9H9J4 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC24.8■■□□□ 1.56
USP42Q9H9J4 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC24.8■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms