Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
MMP28Q9H239 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
MMP28Q9H239 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC17.17■□□□□ 0.34
MMP28Q9H239 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
MMP28Q9H239 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
MMP28Q9H239 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
MMP28Q9H239 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MMP28Q9H239 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MMP28Q9H239 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MMP28Q9H239 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
MMP28Q9H239 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
MMP28Q9H239 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
MMP28Q9H239 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MMP28Q9H239 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
MMP28Q9H239 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
MMP28Q9H239 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC17.16■□□□□ 0.34
MMP28Q9H239 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC17.16■□□□□ 0.34
MMP28Q9H239 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
MMP28Q9H239 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
MMP28Q9H239 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC17.16■□□□□ 0.34
MMP28Q9H239 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC17.16■□□□□ 0.34
MMP28Q9H239 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC17.16■□□□□ 0.34
MMP28Q9H239 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
MMP28Q9H239 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MMP28Q9H239 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MMP28Q9H239 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
MMP28Q9H239 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
MMP28Q9H239 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
MMP28Q9H239 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MMP28Q9H239 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
MMP28Q9H239 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MMP28Q9H239 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
MMP28Q9H239 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
MMP28Q9H239 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
MMP28Q9H239 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
MMP28Q9H239 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
MMP28Q9H239 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
MMP28Q9H239 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
MMP28Q9H239 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
MMP28Q9H239 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC17.15■□□□□ 0.34
MMP28Q9H239 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.15■□□□□ 0.34
MMP28Q9H239 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
MMP28Q9H239 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC17.15■□□□□ 0.34
MMP28Q9H239 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
MMP28Q9H239 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.15■□□□□ 0.34
MMP28Q9H239 SERP1-208ENST00000491660 830 ntTSL 2 BASIC17.15■□□□□ 0.34
MMP28Q9H239 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
MMP28Q9H239 TESC-206ENST00000541210 936 ntTSL 3 BASIC17.15■□□□□ 0.34
MMP28Q9H239 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC17.15■□□□□ 0.34
MMP28Q9H239 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC17.15■□□□□ 0.34
MMP28Q9H239 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
MMP28Q9H239 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
MMP28Q9H239 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC17.15■□□□□ 0.34
MMP28Q9H239 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
MMP28Q9H239 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC17.15■□□□□ 0.34
MMP28Q9H239 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC17.15■□□□□ 0.34
MMP28Q9H239 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
MMP28Q9H239 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
MMP28Q9H239 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
MMP28Q9H239 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
MMP28Q9H239 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
MMP28Q9H239 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
MMP28Q9H239 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC17.14■□□□□ 0.33
MMP28Q9H239 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
MMP28Q9H239 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC17.14■□□□□ 0.33
MMP28Q9H239 GXYLT1P2-201ENST00000433312 1230 ntBASIC17.14■□□□□ 0.33
MMP28Q9H239 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC17.14■□□□□ 0.33
MMP28Q9H239 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
MMP28Q9H239 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC17.14■□□□□ 0.33
MMP28Q9H239 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
MMP28Q9H239 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC17.14■□□□□ 0.33
MMP28Q9H239 AC138907.5-202ENST00000569484 235 ntBASIC17.14■□□□□ 0.33
MMP28Q9H239 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
MMP28Q9H239 AC092437.1-201ENST00000624794 1048 ntBASIC17.14■□□□□ 0.33
MMP28Q9H239 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
MMP28Q9H239 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC17.14■□□□□ 0.33
MMP28Q9H239 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
MMP28Q9H239 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
MMP28Q9H239 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC17.14■□□□□ 0.33
MMP28Q9H239 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.14■□□□□ 0.33
MMP28Q9H239 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
MMP28Q9H239 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
MMP28Q9H239 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
MMP28Q9H239 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
MMP28Q9H239 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
MMP28Q9H239 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
MMP28Q9H239 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MMP28Q9H239 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
MMP28Q9H239 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
MMP28Q9H239 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
MMP28Q9H239 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC17.13■□□□□ 0.33
MMP28Q9H239 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MMP28Q9H239 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
MMP28Q9H239 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC17.13■□□□□ 0.33
MMP28Q9H239 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
MMP28Q9H239 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
MMP28Q9H239 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MMP28Q9H239 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC17.13■□□□□ 0.33
MMP28Q9H239 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC17.13■□□□□ 0.33
MMP28Q9H239 AC104187.1-201ENST00000607510 612 ntBASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 69.5 ms