Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
NKX3-1Q99801 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
NKX3-1Q99801 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
NKX3-1Q99801 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
NKX3-1Q99801 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC16.98■□□□□ 0.31
NKX3-1Q99801 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
NKX3-1Q99801 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC16.98■□□□□ 0.31
NKX3-1Q99801 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC16.98■□□□□ 0.31
NKX3-1Q99801 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
NKX3-1Q99801 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
NKX3-1Q99801 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
NKX3-1Q99801 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
NKX3-1Q99801 KRT18P68-201ENST00000392293 1000 ntBASIC16.98■□□□□ 0.31
NKX3-1Q99801 CYP2T1P-201ENST00000432607 1285 ntBASIC16.98■□□□□ 0.31
NKX3-1Q99801 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC16.98■□□□□ 0.31
NKX3-1Q99801 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC16.98■□□□□ 0.31
NKX3-1Q99801 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC16.98■□□□□ 0.31
NKX3-1Q99801 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC16.98■□□□□ 0.31
NKX3-1Q99801 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC16.98■□□□□ 0.31
NKX3-1Q99801 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
NKX3-1Q99801 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC16.98■□□□□ 0.31
NKX3-1Q99801 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
NKX3-1Q99801 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
NKX3-1Q99801 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
NKX3-1Q99801 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
NKX3-1Q99801 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC16.98■□□□□ 0.31
NKX3-1Q99801 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
NKX3-1Q99801 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
NKX3-1Q99801 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
NKX3-1Q99801 AL049812.1-201ENST00000432563 2267 ntBASIC16.98■□□□□ 0.31
NKX3-1Q99801 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
NKX3-1Q99801 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC16.98■□□□□ 0.31
NKX3-1Q99801 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
NKX3-1Q99801 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
NKX3-1Q99801 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
NKX3-1Q99801 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC16.97■□□□□ 0.31
NKX3-1Q99801 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
NKX3-1Q99801 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
NKX3-1Q99801 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
NKX3-1Q99801 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
NKX3-1Q99801 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC16.97■□□□□ 0.31
NKX3-1Q99801 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
NKX3-1Q99801 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
NKX3-1Q99801 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC16.97■□□□□ 0.31
NKX3-1Q99801 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
NKX3-1Q99801 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC16.97■□□□□ 0.31
NKX3-1Q99801 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
NKX3-1Q99801 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
NKX3-1Q99801 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC16.97■□□□□ 0.31
NKX3-1Q99801 KRT18P11-201ENST00000435214 1283 ntBASIC16.97■□□□□ 0.31
NKX3-1Q99801 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
NKX3-1Q99801 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC16.97■□□□□ 0.31
NKX3-1Q99801 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
NKX3-1Q99801 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC16.97■□□□□ 0.31
NKX3-1Q99801 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC16.97■□□□□ 0.31
NKX3-1Q99801 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
NKX3-1Q99801 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
NKX3-1Q99801 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC16.97■□□□□ 0.31
NKX3-1Q99801 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
NKX3-1Q99801 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC16.97■□□□□ 0.31
NKX3-1Q99801 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
NKX3-1Q99801 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC16.97■□□□□ 0.31
NKX3-1Q99801 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
NKX3-1Q99801 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
NKX3-1Q99801 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
NKX3-1Q99801 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
NKX3-1Q99801 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
NKX3-1Q99801 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC16.96■□□□□ 0.31
NKX3-1Q99801 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
NKX3-1Q99801 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
NKX3-1Q99801 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
NKX3-1Q99801 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC16.96■□□□□ 0.31
NKX3-1Q99801 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC16.96■□□□□ 0.31
NKX3-1Q99801 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC16.96■□□□□ 0.31
NKX3-1Q99801 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
NKX3-1Q99801 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
NKX3-1Q99801 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
NKX3-1Q99801 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
NKX3-1Q99801 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
NKX3-1Q99801 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
NKX3-1Q99801 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
NKX3-1Q99801 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
NKX3-1Q99801 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
NKX3-1Q99801 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
NKX3-1Q99801 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
NKX3-1Q99801 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
NKX3-1Q99801 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
NKX3-1Q99801 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
NKX3-1Q99801 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC16.95■□□□□ 0.3
NKX3-1Q99801 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
NKX3-1Q99801 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC16.95■□□□□ 0.3
NKX3-1Q99801 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC16.95■□□□□ 0.3
NKX3-1Q99801 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
NKX3-1Q99801 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NKX3-1Q99801 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NKX3-1Q99801 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC16.95■□□□□ 0.3
NKX3-1Q99801 AC104581.1-202ENST00000635932 2618 ntBASIC16.95■□□□□ 0.3
NKX3-1Q99801 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC16.95■□□□□ 0.3
NKX3-1Q99801 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC16.95■□□□□ 0.3
NKX3-1Q99801 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms