Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRCH3Q96II8 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC21.15■□□□□ 0.98
LRCH3Q96II8 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC21.15■□□□□ 0.98
LRCH3Q96II8 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC21.15■□□□□ 0.98
LRCH3Q96II8 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRCH3Q96II8 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRCH3Q96II8 Telomerase-vert.1-201ENST00000363312 438 ntBASIC21.15■□□□□ 0.98
LRCH3Q96II8 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRCH3Q96II8 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
LRCH3Q96II8 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
LRCH3Q96II8 NUS1P1-201ENST00000446295 882 ntBASIC21.15■□□□□ 0.98
LRCH3Q96II8 TSSC2-201ENST00000450217 709 ntBASIC21.15■□□□□ 0.98
LRCH3Q96II8 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC21.15■□□□□ 0.98
LRCH3Q96II8 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
LRCH3Q96II8 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LRCH3Q96II8 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRCH3Q96II8 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRCH3Q96II8 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRCH3Q96II8 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LRCH3Q96II8 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRCH3Q96II8 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRCH3Q96II8 EXOC3-AS1-202ENST00000623673 1663 ntBASIC21.15■□□□□ 0.98
LRCH3Q96II8 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
LRCH3Q96II8 AP006587.1-201ENST00000534129 1502 ntBASIC21.14■□□□□ 0.98
LRCH3Q96II8 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
LRCH3Q96II8 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
LRCH3Q96II8 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC21.14■□□□□ 0.98
LRCH3Q96II8 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
LRCH3Q96II8 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
LRCH3Q96II8 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC21.14■□□□□ 0.97
LRCH3Q96II8 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
LRCH3Q96II8 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
LRCH3Q96II8 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC21.14■□□□□ 0.97
LRCH3Q96II8 STARP1-201ENST00000397973 869 ntBASIC21.14■□□□□ 0.97
LRCH3Q96II8 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
LRCH3Q96II8 MRPL3P1-201ENST00000400109 1033 ntBASIC21.14■□□□□ 0.97
LRCH3Q96II8 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
LRCH3Q96II8 PMS2P1-201ENST00000431037 1228 ntBASIC21.14■□□□□ 0.97
LRCH3Q96II8 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC21.14■□□□□ 0.97
LRCH3Q96II8 AC092865.5-201ENST00000545435 363 ntBASIC21.14■□□□□ 0.97
LRCH3Q96II8 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC21.14■□□□□ 0.97
LRCH3Q96II8 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
LRCH3Q96II8 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC21.14■□□□□ 0.97
LRCH3Q96II8 NME4-212ENST00000621774 904 ntTSL 3 BASIC21.14■□□□□ 0.97
LRCH3Q96II8 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
LRCH3Q96II8 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
LRCH3Q96II8 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
LRCH3Q96II8 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
LRCH3Q96II8 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC21.14■□□□□ 0.97
LRCH3Q96II8 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
LRCH3Q96II8 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LRCH3Q96II8 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC21.13■□□□□ 0.97
LRCH3Q96II8 KRT18P1-202ENST00000452408 1331 ntBASIC21.13■□□□□ 0.97
LRCH3Q96II8 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
LRCH3Q96II8 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LRCH3Q96II8 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC21.13■□□□□ 0.97
LRCH3Q96II8 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LRCH3Q96II8 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
LRCH3Q96II8 BX640515.1-201ENST00000617215 977 ntBASIC21.13■□□□□ 0.97
LRCH3Q96II8 AF228730.7-201ENST00000641842 219 ntBASIC21.13■□□□□ 0.97
LRCH3Q96II8 BID-212ENST00000614949 1988 ntTSL 5 BASIC21.13■□□□□ 0.97
LRCH3Q96II8 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LRCH3Q96II8 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC21.13■□□□□ 0.97
LRCH3Q96II8 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
LRCH3Q96II8 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LRCH3Q96II8 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC21.13■□□□□ 0.97
LRCH3Q96II8 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC21.13■□□□□ 0.97
LRCH3Q96II8 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
LRCH3Q96II8 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
LRCH3Q96II8 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
LRCH3Q96II8 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
LRCH3Q96II8 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
LRCH3Q96II8 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
LRCH3Q96II8 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
LRCH3Q96II8 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC21.12■□□□□ 0.97
LRCH3Q96II8 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
LRCH3Q96II8 MIR574-201ENST00000385209 96 ntBASIC21.12■□□□□ 0.97
LRCH3Q96II8 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC21.12■□□□□ 0.97
LRCH3Q96II8 TSPY19P-201ENST00000418461 509 ntBASIC21.12■□□□□ 0.97
LRCH3Q96II8 SPDYE15P-201ENST00000424157 909 ntBASIC21.12■□□□□ 0.97
LRCH3Q96II8 TSPY18P-201ENST00000441642 509 ntBASIC21.12■□□□□ 0.97
LRCH3Q96II8 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC21.12■□□□□ 0.97
LRCH3Q96II8 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC21.12■□□□□ 0.97
LRCH3Q96II8 FGF14-AS2-201ENST00000606448 1074 ntBASIC21.12■□□□□ 0.97
LRCH3Q96II8 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
LRCH3Q96II8 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LRCH3Q96II8 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC21.11■□□□□ 0.97
LRCH3Q96II8 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LRCH3Q96II8 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC21.11■□□□□ 0.97
LRCH3Q96II8 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
LRCH3Q96II8 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LRCH3Q96II8 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
LRCH3Q96II8 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LRCH3Q96II8 AL645929.1-201ENST00000420084 975 ntBASIC21.11■□□□□ 0.97
LRCH3Q96II8 AL590627.1-203ENST00000421194 1026 ntBASIC21.11■□□□□ 0.97
LRCH3Q96II8 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LRCH3Q96II8 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LRCH3Q96II8 AP002383.4-201ENST00000442518 975 ntBASIC21.11■□□□□ 0.97
LRCH3Q96II8 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
LRCH3Q96II8 AL662844.1-201ENST00000546340 181 ntBASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms