Protein–RNA interactions for Protein: Q8TD31

CCHCR1, Coiled-coil alpha-helical rod protein 1, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1Q8TD31 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCHCR1Q8TD31 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCHCR1Q8TD31 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
CCHCR1Q8TD31 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCHCR1Q8TD31 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCHCR1Q8TD31 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC20.3■□□□□ 0.84
CCHCR1Q8TD31 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCHCR1Q8TD31 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCHCR1Q8TD31 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCHCR1Q8TD31 AL032819.2-201ENST00000624543 2162 ntBASIC20.3■□□□□ 0.84
CCHCR1Q8TD31 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
CCHCR1Q8TD31 OR2A1-AS1-201ENST00000462305 773 ntBASIC20.3■□□□□ 0.84
CCHCR1Q8TD31 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC20.3■□□□□ 0.84
CCHCR1Q8TD31 AC091874.3-201ENST00000512672 1195 ntBASIC20.3■□□□□ 0.84
CCHCR1Q8TD31 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
CCHCR1Q8TD31 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCHCR1Q8TD31 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCHCR1Q8TD31 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCHCR1Q8TD31 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
CCHCR1Q8TD31 PTGES2-AS1-201ENST00000443493 2100 ntBASIC20.3■□□□□ 0.84
CCHCR1Q8TD31 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
CCHCR1Q8TD31 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCHCR1Q8TD31 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
CCHCR1Q8TD31 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC20.3■□□□□ 0.84
CCHCR1Q8TD31 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC20.3■□□□□ 0.84
CCHCR1Q8TD31 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCHCR1Q8TD31 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCHCR1Q8TD31 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC20.29■□□□□ 0.84
CCHCR1Q8TD31 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCHCR1Q8TD31 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCHCR1Q8TD31 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
CCHCR1Q8TD31 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCHCR1Q8TD31 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
CCHCR1Q8TD31 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCHCR1Q8TD31 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
CCHCR1Q8TD31 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC20.29■□□□□ 0.84
CCHCR1Q8TD31 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCHCR1Q8TD31 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC20.29■□□□□ 0.84
CCHCR1Q8TD31 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC20.29■□□□□ 0.84
CCHCR1Q8TD31 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCHCR1Q8TD31 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC20.29■□□□□ 0.84
CCHCR1Q8TD31 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC20.29■□□□□ 0.84
CCHCR1Q8TD31 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC20.29■□□□□ 0.84
CCHCR1Q8TD31 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
CCHCR1Q8TD31 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC20.29■□□□□ 0.84
CCHCR1Q8TD31 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.84
CCHCR1Q8TD31 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
CCHCR1Q8TD31 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCHCR1Q8TD31 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC20.29■□□□□ 0.84
CCHCR1Q8TD31 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCHCR1Q8TD31 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCHCR1Q8TD31 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCHCR1Q8TD31 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCHCR1Q8TD31 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCHCR1Q8TD31 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC20.28■□□□□ 0.84
CCHCR1Q8TD31 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCHCR1Q8TD31 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCHCR1Q8TD31 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCHCR1Q8TD31 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC20.28■□□□□ 0.84
CCHCR1Q8TD31 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC20.28■□□□□ 0.84
CCHCR1Q8TD31 RHEB-204ENST00000472642 900 ntTSL 3 BASIC20.28■□□□□ 0.84
CCHCR1Q8TD31 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCHCR1Q8TD31 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC20.28■□□□□ 0.84
CCHCR1Q8TD31 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC20.28■□□□□ 0.84
CCHCR1Q8TD31 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCHCR1Q8TD31 BET1L-207ENST00000529614 560 ntTSL 5 BASIC20.28■□□□□ 0.84
CCHCR1Q8TD31 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCHCR1Q8TD31 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
CCHCR1Q8TD31 C2orf69P4-201ENST00000565394 541 ntBASIC20.28■□□□□ 0.84
CCHCR1Q8TD31 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCHCR1Q8TD31 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCHCR1Q8TD31 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC20.28■□□□□ 0.84
CCHCR1Q8TD31 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC20.28■□□□□ 0.84
CCHCR1Q8TD31 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCHCR1Q8TD31 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCHCR1Q8TD31 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCHCR1Q8TD31 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCHCR1Q8TD31 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCHCR1Q8TD31 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CCHCR1Q8TD31 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC20.27■□□□□ 0.84
CCHCR1Q8TD31 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
CCHCR1Q8TD31 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
CCHCR1Q8TD31 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC20.27■□□□□ 0.84
CCHCR1Q8TD31 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CCHCR1Q8TD31 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CCHCR1Q8TD31 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCHCR1Q8TD31 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCHCR1Q8TD31 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCHCR1Q8TD31 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC20.27■□□□□ 0.84
CCHCR1Q8TD31 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCHCR1Q8TD31 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC20.27■□□□□ 0.84
CCHCR1Q8TD31 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCHCR1Q8TD31 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCHCR1Q8TD31 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC20.27■□□□□ 0.84
CCHCR1Q8TD31 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC20.27■□□□□ 0.83
CCHCR1Q8TD31 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC20.27■□□□□ 0.83
CCHCR1Q8TD31 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCHCR1Q8TD31 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
CCHCR1Q8TD31 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCHCR1Q8TD31 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms