Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SKA3Q8IX90 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SKA3Q8IX90 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SKA3Q8IX90 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
SKA3Q8IX90 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SKA3Q8IX90 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SKA3Q8IX90 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC17.24■□□□□ 0.35
SKA3Q8IX90 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
SKA3Q8IX90 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SKA3Q8IX90 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SKA3Q8IX90 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC17.24■□□□□ 0.35
SKA3Q8IX90 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SKA3Q8IX90 FAM201B-201ENST00000458407 597 ntBASIC17.24■□□□□ 0.35
SKA3Q8IX90 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
SKA3Q8IX90 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC17.24■□□□□ 0.35
SKA3Q8IX90 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SKA3Q8IX90 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SKA3Q8IX90 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
SKA3Q8IX90 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC17.24■□□□□ 0.35
SKA3Q8IX90 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
SKA3Q8IX90 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SKA3Q8IX90 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SKA3Q8IX90 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SKA3Q8IX90 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SKA3Q8IX90 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SKA3Q8IX90 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SKA3Q8IX90 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SKA3Q8IX90 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SKA3Q8IX90 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
SKA3Q8IX90 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC17.23■□□□□ 0.35
SKA3Q8IX90 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
SKA3Q8IX90 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SKA3Q8IX90 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
SKA3Q8IX90 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SKA3Q8IX90 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SKA3Q8IX90 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SKA3Q8IX90 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SKA3Q8IX90 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC17.23■□□□□ 0.35
SKA3Q8IX90 AC128676.1-201ENST00000454392 318 ntBASIC17.23■□□□□ 0.35
SKA3Q8IX90 MTDHP1-201ENST00000605323 784 ntBASIC17.23■□□□□ 0.35
SKA3Q8IX90 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SKA3Q8IX90 AC073648.6-201ENST00000641589 218 ntBASIC17.23■□□□□ 0.35
SKA3Q8IX90 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
SKA3Q8IX90 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
SKA3Q8IX90 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SKA3Q8IX90 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SKA3Q8IX90 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC17.23■□□□□ 0.35
SKA3Q8IX90 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SKA3Q8IX90 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SKA3Q8IX90 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
SKA3Q8IX90 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SKA3Q8IX90 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC17.22■□□□□ 0.35
SKA3Q8IX90 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
SKA3Q8IX90 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
SKA3Q8IX90 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SKA3Q8IX90 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
SKA3Q8IX90 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SKA3Q8IX90 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC17.22■□□□□ 0.35
SKA3Q8IX90 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
SKA3Q8IX90 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
SKA3Q8IX90 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SKA3Q8IX90 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC17.22■□□□□ 0.35
SKA3Q8IX90 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC17.22■□□□□ 0.35
SKA3Q8IX90 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SKA3Q8IX90 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SKA3Q8IX90 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SKA3Q8IX90 TREX2-204ENST00000370212 861 ntTSL 5 BASIC17.22■□□□□ 0.35
SKA3Q8IX90 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
SKA3Q8IX90 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
SKA3Q8IX90 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
SKA3Q8IX90 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
SKA3Q8IX90 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC17.22■□□□□ 0.35
SKA3Q8IX90 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC17.22■□□□□ 0.35
SKA3Q8IX90 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC17.22■□□□□ 0.35
SKA3Q8IX90 PRKY-204ENST00000533551 1019 ntBASIC17.22■□□□□ 0.35
SKA3Q8IX90 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC17.22■□□□□ 0.35
SKA3Q8IX90 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SKA3Q8IX90 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC17.22■□□□□ 0.35
SKA3Q8IX90 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC17.22■□□□□ 0.35
SKA3Q8IX90 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
SKA3Q8IX90 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC17.22■□□□□ 0.35
SKA3Q8IX90 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SKA3Q8IX90 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
SKA3Q8IX90 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC17.22■□□□□ 0.35
SKA3Q8IX90 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SKA3Q8IX90 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
SKA3Q8IX90 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC17.22■□□□□ 0.35
SKA3Q8IX90 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC17.22■□□□□ 0.35
SKA3Q8IX90 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SKA3Q8IX90 AP006587.1-201ENST00000534129 1502 ntBASIC17.21■□□□□ 0.35
SKA3Q8IX90 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC17.21■□□□□ 0.35
SKA3Q8IX90 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.35
SKA3Q8IX90 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC17.21■□□□□ 0.35
SKA3Q8IX90 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC17.21■□□□□ 0.35
SKA3Q8IX90 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SKA3Q8IX90 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
SKA3Q8IX90 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC17.21■□□□□ 0.35
SKA3Q8IX90 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC17.21■□□□□ 0.35
SKA3Q8IX90 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SKA3Q8IX90 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms