Protein–RNA interactions for Protein: Q8IX30

SCUBE3, Signal peptide, CUB and EGF-like domain-containing protein 3, humanhuman

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3Q8IX30 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SCUBE3Q8IX30 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SCUBE3Q8IX30 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SCUBE3Q8IX30 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SCUBE3Q8IX30 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SCUBE3Q8IX30 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SCUBE3Q8IX30 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SCUBE3Q8IX30 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SCUBE3Q8IX30 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.53■□□□□ 0.88
SCUBE3Q8IX30 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SCUBE3Q8IX30 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SCUBE3Q8IX30 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC20.53■□□□□ 0.88
SCUBE3Q8IX30 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SCUBE3Q8IX30 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.52■□□□□ 0.88
SCUBE3Q8IX30 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SCUBE3Q8IX30 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
SCUBE3Q8IX30 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
SCUBE3Q8IX30 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
SCUBE3Q8IX30 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SCUBE3Q8IX30 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC20.52■□□□□ 0.88
SCUBE3Q8IX30 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.88
SCUBE3Q8IX30 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
SCUBE3Q8IX30 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC20.52■□□□□ 0.88
SCUBE3Q8IX30 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SCUBE3Q8IX30 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
SCUBE3Q8IX30 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC20.52■□□□□ 0.88
SCUBE3Q8IX30 CABP2-204ENST00000636477 941 ntTSL 5 BASIC20.52■□□□□ 0.88
SCUBE3Q8IX30 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SCUBE3Q8IX30 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SCUBE3Q8IX30 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC20.52■□□□□ 0.88
SCUBE3Q8IX30 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SCUBE3Q8IX30 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC20.52■□□□□ 0.87
SCUBE3Q8IX30 KRT8P8-201ENST00000434750 1448 ntBASIC20.52■□□□□ 0.87
SCUBE3Q8IX30 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SCUBE3Q8IX30 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SCUBE3Q8IX30 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SCUBE3Q8IX30 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
SCUBE3Q8IX30 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SCUBE3Q8IX30 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SCUBE3Q8IX30 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SCUBE3Q8IX30 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC20.51■□□□□ 0.87
SCUBE3Q8IX30 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SCUBE3Q8IX30 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC20.51■□□□□ 0.87
SCUBE3Q8IX30 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SCUBE3Q8IX30 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC20.51■□□□□ 0.87
SCUBE3Q8IX30 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SCUBE3Q8IX30 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
SCUBE3Q8IX30 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
SCUBE3Q8IX30 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
SCUBE3Q8IX30 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SCUBE3Q8IX30 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC20.51■□□□□ 0.87
SCUBE3Q8IX30 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC20.51■□□□□ 0.87
SCUBE3Q8IX30 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC20.51■□□□□ 0.87
SCUBE3Q8IX30 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
SCUBE3Q8IX30 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC20.51■□□□□ 0.87
SCUBE3Q8IX30 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC20.51■□□□□ 0.87
SCUBE3Q8IX30 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SCUBE3Q8IX30 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SCUBE3Q8IX30 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC20.51■□□□□ 0.87
SCUBE3Q8IX30 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SCUBE3Q8IX30 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SCUBE3Q8IX30 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC20.5■□□□□ 0.87
SCUBE3Q8IX30 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SCUBE3Q8IX30 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC20.5■□□□□ 0.87
SCUBE3Q8IX30 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SCUBE3Q8IX30 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SCUBE3Q8IX30 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SCUBE3Q8IX30 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC20.5■□□□□ 0.87
SCUBE3Q8IX30 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
SCUBE3Q8IX30 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SCUBE3Q8IX30 BAALC-201ENST00000297574 801 ntTSL 3 BASIC20.5■□□□□ 0.87
SCUBE3Q8IX30 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SCUBE3Q8IX30 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SCUBE3Q8IX30 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SCUBE3Q8IX30 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC20.5■□□□□ 0.87
SCUBE3Q8IX30 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC20.5■□□□□ 0.87
SCUBE3Q8IX30 UBE2SP1-201ENST00000450587 669 ntBASIC20.5■□□□□ 0.87
SCUBE3Q8IX30 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC20.5■□□□□ 0.87
SCUBE3Q8IX30 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC20.5■□□□□ 0.87
SCUBE3Q8IX30 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC20.5■□□□□ 0.87
SCUBE3Q8IX30 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC20.5■□□□□ 0.87
SCUBE3Q8IX30 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SCUBE3Q8IX30 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SCUBE3Q8IX30 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC20.5■□□□□ 0.87
SCUBE3Q8IX30 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC20.5■□□□□ 0.87
SCUBE3Q8IX30 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SCUBE3Q8IX30 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SCUBE3Q8IX30 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
SCUBE3Q8IX30 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
SCUBE3Q8IX30 POLI-202ENST00000406285 2030 ntTSL 2 BASIC20.49■□□□□ 0.87
SCUBE3Q8IX30 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC20.49■□□□□ 0.87
SCUBE3Q8IX30 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
SCUBE3Q8IX30 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC20.49■□□□□ 0.87
SCUBE3Q8IX30 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SCUBE3Q8IX30 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SCUBE3Q8IX30 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SCUBE3Q8IX30 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SCUBE3Q8IX30 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SCUBE3Q8IX30 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SCUBE3Q8IX30 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms