Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC20.37■□□□□ 0.85
HDAC4P56524 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
HDAC4P56524 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HDAC4P56524 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC20.37■□□□□ 0.85
HDAC4P56524 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC20.37■□□□□ 0.85
HDAC4P56524 AC128676.1-201ENST00000454392 318 ntBASIC20.37■□□□□ 0.85
HDAC4P56524 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
HDAC4P56524 F2R-202ENST00000505600 442 ntTSL 2 BASIC20.37■□□□□ 0.85
HDAC4P56524 KRT18P16-201ENST00000510337 1294 ntBASIC20.37■□□□□ 0.85
HDAC4P56524 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC20.37■□□□□ 0.85
HDAC4P56524 PRKY-204ENST00000533551 1019 ntBASIC20.37■□□□□ 0.85
HDAC4P56524 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC20.37■□□□□ 0.85
HDAC4P56524 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC20.37■□□□□ 0.85
HDAC4P56524 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
HDAC4P56524 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC20.37■□□□□ 0.85
HDAC4P56524 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
HDAC4P56524 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HDAC4P56524 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
HDAC4P56524 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
HDAC4P56524 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC20.37■□□□□ 0.85
HDAC4P56524 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
HDAC4P56524 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
HDAC4P56524 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
HDAC4P56524 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC20.36■□□□□ 0.85
HDAC4P56524 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
HDAC4P56524 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC20.36■□□□□ 0.85
HDAC4P56524 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
HDAC4P56524 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HDAC4P56524 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.36■□□□□ 0.85
HDAC4P56524 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC20.36■□□□□ 0.85
HDAC4P56524 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
HDAC4P56524 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC20.36■□□□□ 0.85
HDAC4P56524 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HDAC4P56524 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC20.36■□□□□ 0.85
HDAC4P56524 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HDAC4P56524 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
HDAC4P56524 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC20.36■□□□□ 0.85
HDAC4P56524 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC20.36■□□□□ 0.85
HDAC4P56524 AL023875.1-201ENST00000640777 796 ntBASIC20.36■□□□□ 0.85
HDAC4P56524 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HDAC4P56524 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HDAC4P56524 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
HDAC4P56524 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HDAC4P56524 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC20.36■□□□□ 0.85
HDAC4P56524 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HDAC4P56524 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HDAC4P56524 AC116562.4-201ENST00000641316 2276 ntBASIC20.36■□□□□ 0.85
HDAC4P56524 AC093484.2-201ENST00000580996 2166 ntBASIC20.35■□□□□ 0.85
HDAC4P56524 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
HDAC4P56524 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
HDAC4P56524 TP73-202ENST00000354437 2140 ntTSL 5 BASIC20.35■□□□□ 0.85
HDAC4P56524 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC20.35■□□□□ 0.85
HDAC4P56524 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
HDAC4P56524 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
HDAC4P56524 SERF2-207ENST00000409614 582 ntTSL 2 BASIC20.35■□□□□ 0.85
HDAC4P56524 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC20.35■□□□□ 0.85
HDAC4P56524 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
HDAC4P56524 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC20.35■□□□□ 0.85
HDAC4P56524 RN7SL471P-201ENST00000580476 299 ntBASIC20.35■□□□□ 0.85
HDAC4P56524 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC20.35■□□□□ 0.85
HDAC4P56524 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC20.35■□□□□ 0.85
HDAC4P56524 NBPF21P-201ENST00000425093 1451 ntBASIC20.35■□□□□ 0.85
HDAC4P56524 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC20.35■□□□□ 0.85
HDAC4P56524 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
HDAC4P56524 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HDAC4P56524 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
HDAC4P56524 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HDAC4P56524 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HDAC4P56524 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HDAC4P56524 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC20.35■□□□□ 0.85
HDAC4P56524 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
HDAC4P56524 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
HDAC4P56524 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC20.34■□□□□ 0.85
HDAC4P56524 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
HDAC4P56524 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
HDAC4P56524 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC20.34■□□□□ 0.85
HDAC4P56524 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HDAC4P56524 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HDAC4P56524 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC20.34■□□□□ 0.85
HDAC4P56524 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
HDAC4P56524 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
HDAC4P56524 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
HDAC4P56524 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC20.34■□□□□ 0.85
HDAC4P56524 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
HDAC4P56524 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
HDAC4P56524 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
HDAC4P56524 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
HDAC4P56524 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HDAC4P56524 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HDAC4P56524 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
HDAC4P56524 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HDAC4P56524 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC20.34■□□□□ 0.85
HDAC4P56524 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC20.34■□□□□ 0.85
HDAC4P56524 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HDAC4P56524 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC20.34■□□□□ 0.85
HDAC4P56524 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC20.34■□□□□ 0.85
HDAC4P56524 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HDAC4P56524 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
HDAC4P56524 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC20.33■□□□□ 0.85
HDAC4P56524 Z82202.1-201ENST00000623446 1880 ntBASIC20.33■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms