Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
CTCFP49711 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC22.65■■□□□ 1.22
CTCFP49711 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CTCFP49711 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC22.65■■□□□ 1.22
CTCFP49711 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC22.64■■□□□ 1.22
CTCFP49711 AC016734.2-201ENST00000624325 1377 ntBASIC22.64■■□□□ 1.22
CTCFP49711 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
CTCFP49711 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.22
CTCFP49711 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
CTCFP49711 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
CTCFP49711 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC22.64■■□□□ 1.21
CTCFP49711 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
CTCFP49711 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC22.64■■□□□ 1.21
CTCFP49711 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
CTCFP49711 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC22.64■■□□□ 1.21
CTCFP49711 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC22.64■■□□□ 1.21
CTCFP49711 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC22.64■■□□□ 1.21
CTCFP49711 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
CTCFP49711 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
CTCFP49711 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC22.64■■□□□ 1.21
CTCFP49711 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC22.63■■□□□ 1.21
CTCFP49711 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
CTCFP49711 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC22.63■■□□□ 1.21
CTCFP49711 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC22.63■■□□□ 1.21
CTCFP49711 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
CTCFP49711 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
CTCFP49711 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC22.63■■□□□ 1.21
CTCFP49711 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC22.63■■□□□ 1.21
CTCFP49711 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC22.63■■□□□ 1.21
CTCFP49711 AP002383.4-201ENST00000442518 975 ntBASIC22.63■■□□□ 1.21
CTCFP49711 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC22.63■■□□□ 1.21
CTCFP49711 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC22.63■■□□□ 1.21
CTCFP49711 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC22.63■■□□□ 1.21
CTCFP49711 EFS-203ENST00000429593 2610 ntTSL 2 BASIC22.63■■□□□ 1.21
CTCFP49711 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
CTCFP49711 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
CTCFP49711 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC22.63■■□□□ 1.21
CTCFP49711 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC22.63■■□□□ 1.21
CTCFP49711 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC22.63■■□□□ 1.21
CTCFP49711 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
CTCFP49711 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC22.62■■□□□ 1.21
CTCFP49711 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC22.62■■□□□ 1.21
CTCFP49711 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CTCFP49711 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
CTCFP49711 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
CTCFP49711 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CTCFP49711 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC22.62■■□□□ 1.21
CTCFP49711 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CTCFP49711 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
CTCFP49711 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC22.62■■□□□ 1.21
CTCFP49711 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CTCFP49711 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC22.62■■□□□ 1.21
CTCFP49711 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC22.62■■□□□ 1.21
CTCFP49711 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC22.62■■□□□ 1.21
CTCFP49711 CFL1-212ENST00000531413 636 ntTSL 3 BASIC22.62■■□□□ 1.21
CTCFP49711 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC22.62■■□□□ 1.21
CTCFP49711 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC22.62■■□□□ 1.21
CTCFP49711 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC22.62■■□□□ 1.21
CTCFP49711 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
CTCFP49711 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
CTCFP49711 BX119927.1-201ENST00000636596 1552 ntBASIC22.62■■□□□ 1.21
CTCFP49711 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
CTCFP49711 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
CTCFP49711 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC22.61■■□□□ 1.21
CTCFP49711 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
CTCFP49711 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
CTCFP49711 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
CTCFP49711 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC22.61■■□□□ 1.21
CTCFP49711 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
CTCFP49711 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC22.61■■□□□ 1.21
CTCFP49711 PTPA-216ENST00000432651 857 ntTSL 2 BASIC22.61■■□□□ 1.21
CTCFP49711 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC22.61■■□□□ 1.21
CTCFP49711 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
CTCFP49711 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC22.61■■□□□ 1.21
CTCFP49711 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
CTCFP49711 AP002414.4-201ENST00000589764 1148 ntBASIC22.61■■□□□ 1.21
CTCFP49711 AL139424.1-201ENST00000607572 797 ntBASIC22.61■■□□□ 1.21
CTCFP49711 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
CTCFP49711 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC22.61■■□□□ 1.21
CTCFP49711 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
CTCFP49711 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
CTCFP49711 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC22.6■■□□□ 1.21
CTCFP49711 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC22.6■■□□□ 1.21
CTCFP49711 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
CTCFP49711 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
CTCFP49711 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC22.6■■□□□ 1.21
CTCFP49711 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC22.6■■□□□ 1.21
CTCFP49711 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
CTCFP49711 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
CTCFP49711 GGCT-205ENST00000409436 954 ntTSL 3 BASIC22.6■■□□□ 1.21
CTCFP49711 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC22.6■■□□□ 1.21
CTCFP49711 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC22.6■■□□□ 1.21
CTCFP49711 CA15P1-201ENST00000481698 905 ntBASIC22.6■■□□□ 1.21
CTCFP49711 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC22.6■■□□□ 1.21
CTCFP49711 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC22.6■■□□□ 1.21
CTCFP49711 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC22.6■■□□□ 1.21
CTCFP49711 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC22.6■■□□□ 1.21
CTCFP49711 GCSHP2-201ENST00000560971 527 ntBASIC22.6■■□□□ 1.21
CTCFP49711 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC22.6■■□□□ 1.21
CTCFP49711 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC22.6■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms