Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 MIR4758-201ENST00000577688 71 ntBASIC17.13■□□□□ 0.33
CX3CR1P49238 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC17.13■□□□□ 0.33
CX3CR1P49238 AC006557.6-201ENST00000623071 864 ntBASIC17.13■□□□□ 0.33
CX3CR1P49238 PFKL-212ENST00000628044 129 ntTSL 3 BASIC17.13■□□□□ 0.33
CX3CR1P49238 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CX3CR1P49238 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CX3CR1P49238 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC17.13■□□□□ 0.33
CX3CR1P49238 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC17.13■□□□□ 0.33
CX3CR1P49238 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CX3CR1P49238 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CX3CR1P49238 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CX3CR1P49238 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CX3CR1P49238 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CX3CR1P49238 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CX3CR1P49238 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CX3CR1P49238 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
CX3CR1P49238 MCC-208ENST00000514701 2855 ntTSL 2 BASIC17.12■□□□□ 0.33
CX3CR1P49238 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
CX3CR1P49238 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CX3CR1P49238 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CX3CR1P49238 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CX3CR1P49238 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CX3CR1P49238 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
CX3CR1P49238 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CX3CR1P49238 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CX3CR1P49238 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CX3CR1P49238 PPP1R14BP2-201ENST00000426284 444 ntBASIC17.12■□□□□ 0.33
CX3CR1P49238 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC17.12■□□□□ 0.33
CX3CR1P49238 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CX3CR1P49238 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC17.12■□□□□ 0.33
CX3CR1P49238 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC17.12■□□□□ 0.33
CX3CR1P49238 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC17.12■□□□□ 0.33
CX3CR1P49238 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CX3CR1P49238 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CX3CR1P49238 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CX3CR1P49238 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
CX3CR1P49238 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CX3CR1P49238 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
CX3CR1P49238 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CX3CR1P49238 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC17.12■□□□□ 0.33
CX3CR1P49238 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CX3CR1P49238 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CX3CR1P49238 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
CX3CR1P49238 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
CX3CR1P49238 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC17.11■□□□□ 0.33
CX3CR1P49238 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
CX3CR1P49238 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC17.11■□□□□ 0.33
CX3CR1P49238 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC17.11■□□□□ 0.33
CX3CR1P49238 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC17.11■□□□□ 0.33
CX3CR1P49238 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CX3CR1P49238 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CX3CR1P49238 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CX3CR1P49238 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CX3CR1P49238 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC17.11■□□□□ 0.33
CX3CR1P49238 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CX3CR1P49238 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC17.11■□□□□ 0.33
CX3CR1P49238 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC17.11■□□□□ 0.33
CX3CR1P49238 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC17.11■□□□□ 0.33
CX3CR1P49238 RHEB-204ENST00000472642 900 ntTSL 3 BASIC17.11■□□□□ 0.33
CX3CR1P49238 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC17.11■□□□□ 0.33
CX3CR1P49238 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC17.11■□□□□ 0.33
CX3CR1P49238 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CX3CR1P49238 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CX3CR1P49238 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CX3CR1P49238 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC17.11■□□□□ 0.33
CX3CR1P49238 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CX3CR1P49238 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CX3CR1P49238 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CX3CR1P49238 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CX3CR1P49238 TFP1-202ENST00000475455 1573 ntBASIC17.11■□□□□ 0.33
CX3CR1P49238 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CX3CR1P49238 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC17.1■□□□□ 0.33
CX3CR1P49238 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CX3CR1P49238 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CX3CR1P49238 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CX3CR1P49238 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CX3CR1P49238 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CX3CR1P49238 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CX3CR1P49238 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CX3CR1P49238 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CX3CR1P49238 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CX3CR1P49238 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC17.1■□□□□ 0.33
CX3CR1P49238 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC17.1■□□□□ 0.33
CX3CR1P49238 Z82202.1-201ENST00000623446 1880 ntBASIC17.1■□□□□ 0.33
CX3CR1P49238 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CX3CR1P49238 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CX3CR1P49238 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CX3CR1P49238 MAP2K4P1-201ENST00000438453 1195 ntBASIC17.1■□□□□ 0.33
CX3CR1P49238 AC097658.1-201ENST00000475555 843 ntBASIC17.1■□□□□ 0.33
CX3CR1P49238 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC17.1■□□□□ 0.33
CX3CR1P49238 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
CX3CR1P49238 TK2-208ENST00000545043 1120 ntTSL 2 BASIC17.1■□□□□ 0.33
CX3CR1P49238 GXYLT1P5-201ENST00000614548 1189 ntBASIC17.1■□□□□ 0.33
CX3CR1P49238 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
CX3CR1P49238 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC17.1■□□□□ 0.33
CX3CR1P49238 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CX3CR1P49238 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CX3CR1P49238 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CX3CR1P49238 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC17.1■□□□□ 0.33
CX3CR1P49238 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms