Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC18.3■□□□□ 0.52
RFX3P48380 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC18.3■□□□□ 0.52
RFX3P48380 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFX3P48380 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC18.3■□□□□ 0.52
RFX3P48380 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFX3P48380 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFX3P48380 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFX3P48380 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFX3P48380 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
RFX3P48380 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC18.3■□□□□ 0.52
RFX3P48380 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC18.3■□□□□ 0.52
RFX3P48380 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC18.3■□□□□ 0.52
RFX3P48380 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC18.3■□□□□ 0.52
RFX3P48380 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC18.3■□□□□ 0.52
RFX3P48380 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC18.3■□□□□ 0.52
RFX3P48380 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC18.3■□□□□ 0.52
RFX3P48380 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC18.3■□□□□ 0.52
RFX3P48380 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFX3P48380 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
RFX3P48380 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFX3P48380 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC18.3■□□□□ 0.52
RFX3P48380 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC18.3■□□□□ 0.52
RFX3P48380 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC18.3■□□□□ 0.52
RFX3P48380 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
RFX3P48380 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFX3P48380 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFX3P48380 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFX3P48380 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFX3P48380 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
RFX3P48380 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
RFX3P48380 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RFX3P48380 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC18.29■□□□□ 0.52
RFX3P48380 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RFX3P48380 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
RFX3P48380 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
RFX3P48380 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RFX3P48380 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RFX3P48380 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
RFX3P48380 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RFX3P48380 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RFX3P48380 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
RFX3P48380 AC018553.1-201ENST00000616682 1458 ntBASIC18.29■□□□□ 0.52
RFX3P48380 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
RFX3P48380 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC18.29■□□□□ 0.52
RFX3P48380 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC18.29■□□□□ 0.52
RFX3P48380 ABHD17AP6-201ENST00000458502 1044 ntBASIC18.29■□□□□ 0.52
RFX3P48380 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RFX3P48380 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC18.29■□□□□ 0.52
RFX3P48380 KRT18P6-201ENST00000555540 1265 ntBASIC18.29■□□□□ 0.52
RFX3P48380 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC18.29■□□□□ 0.52
RFX3P48380 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC18.29■□□□□ 0.52
RFX3P48380 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC18.29■□□□□ 0.52
RFX3P48380 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
RFX3P48380 AC125437.2-201ENST00000625180 2167 ntBASIC18.29■□□□□ 0.52
RFX3P48380 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC18.29■□□□□ 0.52
RFX3P48380 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RFX3P48380 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC18.29■□□□□ 0.52
RFX3P48380 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
RFX3P48380 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RFX3P48380 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC18.29■□□□□ 0.52
RFX3P48380 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC18.29■□□□□ 0.52
RFX3P48380 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RFX3P48380 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
RFX3P48380 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RFX3P48380 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
RFX3P48380 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
RFX3P48380 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
RFX3P48380 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RFX3P48380 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RFX3P48380 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RFX3P48380 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RFX3P48380 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RFX3P48380 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.28■□□□□ 0.52
RFX3P48380 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
RFX3P48380 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC18.28■□□□□ 0.52
RFX3P48380 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC18.28■□□□□ 0.52
RFX3P48380 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
RFX3P48380 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC18.28■□□□□ 0.52
RFX3P48380 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC18.28■□□□□ 0.52
RFX3P48380 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC18.28■□□□□ 0.52
RFX3P48380 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RFX3P48380 AP001271.2-201ENST00000624018 1556 ntBASIC18.28■□□□□ 0.52
RFX3P48380 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
RFX3P48380 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
RFX3P48380 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RFX3P48380 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC18.28■□□□□ 0.52
RFX3P48380 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RFX3P48380 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RFX3P48380 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
RFX3P48380 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
RFX3P48380 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RFX3P48380 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC18.27■□□□□ 0.52
RFX3P48380 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
RFX3P48380 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC18.27■□□□□ 0.52
RFX3P48380 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RFX3P48380 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
RFX3P48380 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC18.27■□□□□ 0.52
RFX3P48380 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC18.27■□□□□ 0.52
RFX3P48380 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RFX3P48380 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms