Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC15.85■□□□□ 0.13
CDX1P47902 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CDX1P47902 ABHD17AP1-201ENST00000358206 933 ntBASIC15.85■□□□□ 0.13
CDX1P47902 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
CDX1P47902 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC15.85■□□□□ 0.13
CDX1P47902 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC15.85■□□□□ 0.13
CDX1P47902 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC15.85■□□□□ 0.13
CDX1P47902 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC15.85■□□□□ 0.13
CDX1P47902 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
CDX1P47902 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
CDX1P47902 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC15.85■□□□□ 0.13
CDX1P47902 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CDX1P47902 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CDX1P47902 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CDX1P47902 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CDX1P47902 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC15.84■□□□□ 0.13
CDX1P47902 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC15.84■□□□□ 0.13
CDX1P47902 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CDX1P47902 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC15.84■□□□□ 0.13
CDX1P47902 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CDX1P47902 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CDX1P47902 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
CDX1P47902 FAM201B-201ENST00000458407 597 ntBASIC15.84■□□□□ 0.13
CDX1P47902 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CDX1P47902 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CDX1P47902 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CDX1P47902 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC15.84■□□□□ 0.13
CDX1P47902 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC15.84■□□□□ 0.13
CDX1P47902 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC15.84■□□□□ 0.13
CDX1P47902 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC15.84■□□□□ 0.13
CDX1P47902 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CDX1P47902 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
CDX1P47902 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CDX1P47902 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
CDX1P47902 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC15.84■□□□□ 0.13
CDX1P47902 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CDX1P47902 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CDX1P47902 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC15.84■□□□□ 0.13
CDX1P47902 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
CDX1P47902 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CDX1P47902 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CDX1P47902 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CDX1P47902 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC15.84■□□□□ 0.13
CDX1P47902 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC15.83■□□□□ 0.13
CDX1P47902 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.13
CDX1P47902 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.13
CDX1P47902 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
CDX1P47902 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC15.83■□□□□ 0.13
CDX1P47902 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
CDX1P47902 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC15.83■□□□□ 0.12
CDX1P47902 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CDX1P47902 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CDX1P47902 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CDX1P47902 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CDX1P47902 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC15.83■□□□□ 0.12
CDX1P47902 TSPY20P-201ENST00000450910 630 ntBASIC15.83■□□□□ 0.12
CDX1P47902 GATS-209ENST00000454084 1030 ntTSL 3 BASIC15.83■□□□□ 0.12
CDX1P47902 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC15.83■□□□□ 0.12
CDX1P47902 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC15.83■□□□□ 0.12
CDX1P47902 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CDX1P47902 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC15.83■□□□□ 0.12
CDX1P47902 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC15.83■□□□□ 0.12
CDX1P47902 HLA-B-256ENST00000639848 1089 ntBASIC15.83■□□□□ 0.12
CDX1P47902 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
CDX1P47902 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
CDX1P47902 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC15.83■□□□□ 0.12
CDX1P47902 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CDX1P47902 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
CDX1P47902 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC15.83■□□□□ 0.12
CDX1P47902 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
CDX1P47902 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CDX1P47902 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC15.83■□□□□ 0.12
CDX1P47902 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
CDX1P47902 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC15.83■□□□□ 0.12
CDX1P47902 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
CDX1P47902 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CDX1P47902 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CDX1P47902 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC15.83■□□□□ 0.12
CDX1P47902 AC006128.1-201ENST00000624704 1661 ntBASIC15.83■□□□□ 0.12
CDX1P47902 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDX1P47902 AC027702.1-201ENST00000563810 1770 ntBASIC15.82■□□□□ 0.12
CDX1P47902 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDX1P47902 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC15.82■□□□□ 0.12
CDX1P47902 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDX1P47902 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC15.82■□□□□ 0.12
CDX1P47902 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDX1P47902 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDX1P47902 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDX1P47902 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDX1P47902 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDX1P47902 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDX1P47902 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC15.82■□□□□ 0.12
CDX1P47902 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDX1P47902 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC15.82■□□□□ 0.12
CDX1P47902 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDX1P47902 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDX1P47902 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDX1P47902 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC15.82■□□□□ 0.12
CDX1P47902 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC15.82■□□□□ 0.12
CDX1P47902 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC15.82■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms