Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SOX3P41225 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC18.34■□□□□ 0.53
SOX3P41225 AC125437.2-201ENST00000625180 2167 ntBASIC18.34■□□□□ 0.53
SOX3P41225 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
SOX3P41225 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC18.33■□□□□ 0.53
SOX3P41225 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC18.33■□□□□ 0.53
SOX3P41225 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SOX3P41225 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC18.33■□□□□ 0.53
SOX3P41225 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC18.33■□□□□ 0.53
SOX3P41225 SERF2-207ENST00000409614 582 ntTSL 2 BASIC18.33■□□□□ 0.52
SOX3P41225 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC18.33■□□□□ 0.52
SOX3P41225 UBE2SP1-201ENST00000450587 669 ntBASIC18.33■□□□□ 0.52
SOX3P41225 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC18.33■□□□□ 0.52
SOX3P41225 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SOX3P41225 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC18.33■□□□□ 0.52
SOX3P41225 PRKY-204ENST00000533551 1019 ntBASIC18.33■□□□□ 0.52
SOX3P41225 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC18.33■□□□□ 0.52
SOX3P41225 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC18.33■□□□□ 0.52
SOX3P41225 AC124016.1-201ENST00000609552 612 ntBASIC18.33■□□□□ 0.52
SOX3P41225 AL121829.2-201ENST00000620908 328 ntBASIC18.33■□□□□ 0.52
SOX3P41225 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SOX3P41225 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SOX3P41225 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC18.33■□□□□ 0.52
SOX3P41225 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
SOX3P41225 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SOX3P41225 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC18.33■□□□□ 0.52
SOX3P41225 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
SOX3P41225 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SOX3P41225 AP000974.1-201ENST00000623909 2387 ntBASIC18.33■□□□□ 0.52
SOX3P41225 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC18.33■□□□□ 0.52
SOX3P41225 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
SOX3P41225 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SOX3P41225 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SOX3P41225 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SOX3P41225 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SOX3P41225 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SOX3P41225 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SOX3P41225 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SOX3P41225 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SOX3P41225 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SOX3P41225 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SOX3P41225 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SOX3P41225 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SOX3P41225 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC18.32■□□□□ 0.52
SOX3P41225 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SOX3P41225 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
SOX3P41225 KRASP1-201ENST00000407852 552 ntBASIC18.32■□□□□ 0.52
SOX3P41225 MAX-217ENST00000557277 728 ntTSL 3 BASIC18.32■□□□□ 0.52
SOX3P41225 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC18.32■□□□□ 0.52
SOX3P41225 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC18.32■□□□□ 0.52
SOX3P41225 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC18.32■□□□□ 0.52
SOX3P41225 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
SOX3P41225 SPIB-206ENST00000596074 847 ntTSL 2 BASIC18.32■□□□□ 0.52
SOX3P41225 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC18.32■□□□□ 0.52
SOX3P41225 AL121906.2-201ENST00000621597 723 ntBASIC18.32■□□□□ 0.52
SOX3P41225 AP006294.2-201ENST00000641667 209 ntBASIC18.32■□□□□ 0.52
SOX3P41225 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC18.32■□□□□ 0.52
SOX3P41225 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC18.32■□□□□ 0.52
SOX3P41225 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SOX3P41225 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.32■□□□□ 0.52
SOX3P41225 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SOX3P41225 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SOX3P41225 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SOX3P41225 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
SOX3P41225 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC18.32■□□□□ 0.52
SOX3P41225 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SOX3P41225 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SOX3P41225 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SOX3P41225 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SOX3P41225 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SOX3P41225 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC18.31■□□□□ 0.52
SOX3P41225 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC18.31■□□□□ 0.52
SOX3P41225 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC18.31■□□□□ 0.52
SOX3P41225 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
SOX3P41225 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SOX3P41225 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SOX3P41225 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SOX3P41225 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SOX3P41225 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SOX3P41225 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC18.31■□□□□ 0.52
SOX3P41225 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC18.31■□□□□ 0.52
SOX3P41225 PNN-205ENST00000556530 601 ntTSL 2 BASIC18.31■□□□□ 0.52
SOX3P41225 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC18.31■□□□□ 0.52
SOX3P41225 USP36-216ENST00000589424 970 ntTSL 5 BASIC18.31■□□□□ 0.52
SOX3P41225 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
SOX3P41225 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SOX3P41225 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
SOX3P41225 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SOX3P41225 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC18.31■□□□□ 0.52
SOX3P41225 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SOX3P41225 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SOX3P41225 KRT16P6-202ENST00000425692 1426 ntBASIC18.31■□□□□ 0.52
SOX3P41225 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SOX3P41225 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SOX3P41225 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SOX3P41225 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SOX3P41225 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
SOX3P41225 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SOX3P41225 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
SOX3P41225 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms