Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MSX2P35548 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC18.61■□□□□ 0.57
MSX2P35548 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC18.61■□□□□ 0.57
MSX2P35548 SUDS3P1-201ENST00000505831 966 ntBASIC18.61■□□□□ 0.57
MSX2P35548 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.61■□□□□ 0.57
MSX2P35548 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
MSX2P35548 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
MSX2P35548 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.61■□□□□ 0.57
MSX2P35548 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MSX2P35548 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MSX2P35548 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MSX2P35548 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MSX2P35548 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC18.6■□□□□ 0.57
MSX2P35548 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC18.6■□□□□ 0.57
MSX2P35548 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.6■□□□□ 0.57
MSX2P35548 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MSX2P35548 CYP21A1P-202ENST00000354927 1481 ntBASIC18.6■□□□□ 0.57
MSX2P35548 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC18.6■□□□□ 0.57
MSX2P35548 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MSX2P35548 WIZP1-201ENST00000531444 2299 ntBASIC18.6■□□□□ 0.57
MSX2P35548 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC18.6■□□□□ 0.57
MSX2P35548 PEMT-206ENST00000435340 960 ntTSL 5 BASIC18.6■□□□□ 0.57
MSX2P35548 TESC-206ENST00000541210 936 ntTSL 3 BASIC18.6■□□□□ 0.57
MSX2P35548 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC18.6■□□□□ 0.57
MSX2P35548 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC18.6■□□□□ 0.57
MSX2P35548 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC18.6■□□□□ 0.57
MSX2P35548 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MSX2P35548 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
MSX2P35548 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
MSX2P35548 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MSX2P35548 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC18.6■□□□□ 0.57
MSX2P35548 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
MSX2P35548 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
MSX2P35548 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
MSX2P35548 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MSX2P35548 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
MSX2P35548 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
MSX2P35548 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.6■□□□□ 0.57
MSX2P35548 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
MSX2P35548 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC18.6■□□□□ 0.57
MSX2P35548 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MSX2P35548 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
MSX2P35548 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MSX2P35548 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC18.59■□□□□ 0.57
MSX2P35548 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
MSX2P35548 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC18.59■□□□□ 0.57
MSX2P35548 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18.59■□□□□ 0.57
MSX2P35548 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
MSX2P35548 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MSX2P35548 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MSX2P35548 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
MSX2P35548 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC18.59■□□□□ 0.57
MSX2P35548 AC008406.3-201ENST00000620001 1374 ntBASIC18.59■□□□□ 0.57
MSX2P35548 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
MSX2P35548 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
MSX2P35548 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MSX2P35548 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
MSX2P35548 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC18.59■□□□□ 0.57
MSX2P35548 AC097381.1-201ENST00000429019 1296 ntBASIC18.59■□□□□ 0.57
MSX2P35548 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC18.59■□□□□ 0.57
MSX2P35548 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
MSX2P35548 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
MSX2P35548 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
MSX2P35548 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
MSX2P35548 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
MSX2P35548 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
MSX2P35548 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
MSX2P35548 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MSX2P35548 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC18.59■□□□□ 0.57
MSX2P35548 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MSX2P35548 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MSX2P35548 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MSX2P35548 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MSX2P35548 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MSX2P35548 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC18.58■□□□□ 0.57
MSX2P35548 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
MSX2P35548 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC18.58■□□□□ 0.57
MSX2P35548 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
MSX2P35548 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
MSX2P35548 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
MSX2P35548 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
MSX2P35548 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
MSX2P35548 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
MSX2P35548 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
MSX2P35548 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC18.58■□□□□ 0.56
MSX2P35548 SLC7A5P1-201ENST00000568957 537 ntBASIC18.58■□□□□ 0.56
MSX2P35548 AL031963.3-201ENST00000606441 850 ntBASIC18.58■□□□□ 0.56
MSX2P35548 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC18.58■□□□□ 0.56
MSX2P35548 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC18.58■□□□□ 0.56
MSX2P35548 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC18.58■□□□□ 0.56
MSX2P35548 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
MSX2P35548 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC18.58■□□□□ 0.56
MSX2P35548 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC18.58■□□□□ 0.56
MSX2P35548 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
MSX2P35548 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
MSX2P35548 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.58■□□□□ 0.56
MSX2P35548 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
MSX2P35548 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
MSX2P35548 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MSX2P35548 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms