Protein–RNA interactions for Protein: P23396

RPS3, 40S ribosomal protein S3, humanhuman

Known RBP eCLIP

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS3P23396 SH2D2A-203ENST00000392306 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.32e-8■■■■□ 22
RPS3P23396 KDM5C-208ENST00000452825 6096 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.312e-8■■■■□ 22
RPS3P23396 FPGS-211ENST00000475270 560 ntTSL 212.38□□□□□ -0.432e-8■■■■□ 22
RPS3P23396 UBL7-207ENST00000565494 458 ntTSL 211.95□□□□□ -0.52e-8■■■■□ 22
RPS3P23396 UBL7-206ENST00000565335 1414 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.512e-8■■■■□ 22
RPS3P23396 UBL7-205ENST00000565130 792 ntTSL 311.68□□□□□ -0.542e-8■■■■□ 22
RPS3P23396 UBL7-204ENST00000564488 1477 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.572e-8■■■■□ 22
RPS3P23396 UBL7-208ENST00000566365 661 ntTSL 310.71□□□□□ -0.692e-8■■■■□ 22
RPS3P23396 EXOSC7-209ENST00000486727 1647 ntTSL 210.29□□□□□ -0.762e-8■■■■□ 22
RPS3P23396 ANXA11-207ENST00000463340 377 ntTSL 35.41□□□□□ -1.542e-8■■■■□ 22
RPS3P23396 CCT2-201ENST00000299300 2041 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.215e-7■■■■□ 21.9
RPS3P23396 CCT2-203ENST00000544368 1728 ntTSL 5 BASIC9.45□□□□□ -0.95e-7■■■■□ 21.9
RPS3P23396 CCT2-208ENST00000550010 1754 ntTSL 58.43□□□□□ -1.065e-7■■■■□ 21.9
RPS3P23396 ST6GAL1-206ENST00000430309 504 ntTSL 48.61□□□□□ -1.032e-24■■■■□ 21.9
RPS3P23396 ST6GAL1-203ENST00000417392 707 ntTSL 27.97□□□□□ -1.137e-17■■■■□ 21.9
RPS3P23396 ITIH3-205ENST00000465243 824 ntTSL 59.43□□□□□ -0.92e-6■■■■□ 21.9
RPS3P23396 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.183e-7■■■■□ 21.9
RPS3P23396 RPP30-209ENST00000487998 1466 ntTSL 512.87□□□□□ -0.353e-7■■■■□ 21.9
RPS3P23396 RPP30-203ENST00000413330 1004 ntTSL 5 BASIC11.34□□□□□ -0.593e-7■■■■□ 21.9
RPS3P23396 RPP30-201ENST00000277882 767 ntTSL 511.18□□□□□ -0.623e-7■■■■□ 21.9
RPS3P23396 ECH1-214ENST00000601094 440 ntTSL 210.8□□□□□ -0.686e-7■■■■□ 21.9
RPS3P23396 ECH1-205ENST00000595567 308 ntTSL 39.19□□□□□ -0.946e-14■■■■□ 21.9
RPS3P23396 ECH1-206ENST00000596118 356 ntTSL 37.29□□□□□ -1.246e-7■■■■□ 21.9
RPS3P23396 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.944e-6■■■■□ 21.9
RPS3P23396 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.674e-6■■■■□ 21.9
RPS3P23396 SUN2-212ENST00000456894 1074 ntTSL 515.91■□□□□ 0.148e-7■■■■□ 21.9
RPS3P23396 NARS-205ENST00000587194 562 ntTSL 411.78□□□□□ -0.521e-8■■■■□ 21.9
RPS3P23396 KPNA2-207ENST00000584026 561 ntTSL 46.38□□□□□ -1.399e-8■■■■□ 21.9
RPS3P23396 PSRC1-208ENST00000429031 835 ntTSL 321.09■□□□□ 0.972e-8■■■■□ 21.9
RPS3P23396 DHCR7-206ENST00000527316 1005 ntTSL 520.86■□□□□ 0.938e-10■■■■□ 21.9
RPS3P23396 HADHB-203ENST00000412805 574 ntTSL 419.42■□□□□ 0.72e-8■■■■□ 21.9
RPS3P23396 PSRC1-210ENST00000471740 738 ntTSL 319.21■□□□□ 0.672e-8■■■■□ 21.9
RPS3P23396 CNPY2-207ENST00000551276 556 ntTSL 518.93■□□□□ 0.623e-9■■■■□ 21.9
RPS3P23396 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.592e-8■■■■□ 21.9
RPS3P23396 PSRC1-209ENST00000459765 839 ntTSL 218.36■□□□□ 0.532e-8■■■■□ 21.9
RPS3P23396 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.95■□□□□ 0.462e-8■■■■□ 21.9
RPS3P23396 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.84■□□□□ 0.452e-8■■■■□ 21.9
RPS3P23396 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC17.84■□□□□ 0.452e-8■■■■□ 21.9
RPS3P23396 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.432e-8■■■■□ 21.9
RPS3P23396 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.422e-8■■■■□ 21.9
RPS3P23396 PRKCSH-211ENST00000590098 795 ntTSL 217.19■□□□□ 0.349e-11■■■■□ 21.9
RPS3P23396 COPS6-207ENST00000472107 835 ntTSL 216.96■□□□□ 0.312e-8■■■■□ 21.9
RPS3P23396 DHCR7-205ENST00000526780 968 ntTSL 216.71■□□□□ 0.271e-9■■■■□ 21.9
RPS3P23396 COPS6-203ENST00000419210 218 ntTSL 316.66■□□□□ 0.262e-8■■■■□ 21.9
RPS3P23396 LEPR-206ENST00000462765 2117 ntTSL 1 (best)16.66■□□□□ 0.262e-8■■■■□ 21.9
RPS3P23396 HIST2H2BF-203ENST00000469483 752 ntTSL 1 (best)16.26■□□□□ 0.196e-7■■■■□ 21.9
RPS3P23396 PDIA3-205ENST00000469684 374 ntTSL 315.89■□□□□ 0.135e-13■■■■□ 21.9
RPS3P23396 ECD-204ENST00000453402 884 ntTSL 215.78■□□□□ 0.122e-8■■■■□ 21.9
RPS3P23396 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC15.6■□□□□ 0.093e-15■■■■□ 21.9
RPS3P23396 COPS6-205ENST00000465027 1171 ntTSL 1 (best)15.38■□□□□ 0.052e-8■■■■□ 21.9
RPS3P23396 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.032e-8■■■■□ 21.9
RPS3P23396 PSRC1-207ENST00000418914 1040 ntTSL 1 (best)14.78□□□□□ -0.042e-8■■■■□ 21.9
RPS3P23396 PDIA3-203ENST00000446523 596 ntTSL 214.31□□□□□ -0.125e-13■■■■□ 21.9
RPS3P23396 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC14.19□□□□□ -0.146e-7■■■■□ 21.9
RPS3P23396 MYDGF-202ENST00000596031 335 ntTSL 313.46□□□□□ -0.257e-8■■■■□ 21.9
RPS3P23396 ECD-202ENST00000413026 877 ntTSL 312.96□□□□□ -0.332e-8■■■■□ 21.9
RPS3P23396 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC12.73□□□□□ -0.376e-7■■■■□ 21.9
RPS3P23396 LEPR-201ENST00000344610 2935 ntTSL 1 (best) BASIC12.29□□□□□ -0.442e-8■■■■□ 21.9
RPS3P23396 DEGS1-203ENST00000415210 957 ntTSL 512.12□□□□□ -0.472e-8■■■■□ 21.9
RPS3P23396 DEGS1-202ENST00000391877 1345 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.512e-8■■■■□ 21.9
RPS3P23396 NDUFS1-206ENST00000454195 569 ntTSL 411.73□□□□□ -0.532e-8■■■■□ 21.9
RPS3P23396 LEPR-204ENST00000371059 3079 ntTSL 1 (best) BASIC11.49□□□□□ -0.572e-8■■■■□ 21.9
RPS3P23396 LEPR-203ENST00000371058 2805 ntTSL 5 BASIC7.22□□□□□ -1.252e-8■■■■□ 21.9
RPS3P23396 NDUFS1-208ENST00000456284 563 ntTSL 46.69□□□□□ -1.342e-8■■■■□ 21.9
RPS3P23396 ECD-208ENST00000610256 581 ntTSL 56.44□□□□□ -1.382e-8■■■■□ 21.9
RPS3P23396 LEPR-205ENST00000371060 5135 ntTSL 1 (best) BASIC6.2□□□□□ -1.422e-8■■■■□ 21.9
RPS3P23396 CNPY2-212ENST00000553191 621 ntTSL 25.87□□□□□ -1.477e-9■■■■□ 21.9
RPS3P23396 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC5.44□□□□□ -1.542e-8■■■■□ 21.9
RPS3P23396 RPS27L-207ENST00000559763 244 ntTSL 35.25□□□□□ -1.573e-15■■■■□ 21.9
RPS3P23396 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC3.24□□□□□ -1.893e-15■■■■□ 21.9
RPS3P23396 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.942e-8■■■■□ 21.9
RPS3P23396 DEGS1-204ENST00000465848 633 ntTSL 21.92□□□□□ -2.12e-8■■■■□ 21.9
RPS3P23396 F11R-203ENST00000472573 577 ntTSL 24.42□□□□□ -1.79e-7■■■■□ 21.9
RPS3P23396 ST6GAL1-207ENST00000438590 608 ntTSL 311.62□□□□□ -0.557e-17■■■■□ 21.9
RPS3P23396 ST6GAL1-212ENST00000448408 1005 ntTSL 59.78□□□□□ -0.847e-17■■■■□ 21.9
RPS3P23396 ST6GAL1-204ENST00000423451 602 ntTSL 49.26□□□□□ -0.937e-17■■■■□ 21.9
RPS3P23396 ST6GAL1-210ENST00000446170 588 ntTSL 48.71□□□□□ -1.027e-17■■■■□ 21.9
RPS3P23396 ST6GAL1-202ENST00000416235 577 ntTSL 24.7□□□□□ -1.667e-17■■■■□ 21.9
RPS3P23396 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC17.36■□□□□ 0.371e-6■■■■□ 21.9
RPS3P23396 ITM2C-205ENST00000418408 563 ntTSL 414.95□□□□□ -0.021e-6■■■■□ 21.9
RPS3P23396 ITM2C-207ENST00000492029 549 ntTSL 514.3□□□□□ -0.121e-6■■■■□ 21.9
RPS3P23396 ITM2C-209ENST00000543957 573 ntTSL 511.21□□□□□ -0.611e-6■■■■□ 21.9
RPS3P23396 NCSTN-209ENST00000459963 1246 ntTSL 56.94□□□□□ -1.31e-6■■■■□ 21.9
RPS3P23396 F2-203ENST00000469189 610 ntTSL 217.78■□□□□ 0.442e-18■■■■□ 21.9
RPS3P23396 POR-223ENST00000495770 559 ntTSL 213.56□□□□□ -0.243e-22■■■■□ 21.9
RPS3P23396 NCSTN-203ENST00000421914 776 ntTSL 412.41□□□□□ -0.425e-7■■■■□ 21.9
RPS3P23396 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC14.65□□□□□ -0.065e-9■■■■□ 21.9
RPS3P23396 PIM2-201ENST00000376509 2075 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.351e-6■■■■□ 21.9
RPS3P23396 SNRPA-211ENST00000601545 695 ntTSL 520.37■□□□□ 0.851e-9■■■■□ 21.9
RPS3P23396 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.771e-9■■■■□ 21.9
RPS3P23396 SNRPA-210ENST00000601393 969 ntTSL 316.38■□□□□ 0.211e-9■■■■□ 21.9
RPS3P23396 G3BP2-207ENST00000507133 598 ntTSL 33.11□□□□□ -1.912e-6■■■■□ 21.9
RPS3P23396 MIR639-201ENST00000384974 98 ntBASIC24.49■■□□□ 1.511e-15■■■■□ 21.9
RPS3P23396 TECR-225ENST00000601652 551 ntTSL 414.37□□□□□ -0.115e-16■■■■□ 21.9
RPS3P23396 TECR-219ENST00000600076 484 ntTSL 310.24□□□□□ -0.777e-15■■■■□ 21.9
RPS3P23396 ATP13A3-205ENST00000457986 490 ntTSL 323.75■■□□□ 1.394e-14■■■■□ 21.9
RPS3P23396 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC18.86■□□□□ 0.613e-6■■■■□ 21.9
RPS3P23396 CRKL-202ENST00000411769 2037 ntTSL 1 (best)18.81■□□□□ 0.67e-20■■■■□ 21.9
RPS3P23396 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.337e-20■■■■□ 21.9
RPS3P23396 ISM2-206ENST00000487738 1076 ntTSL 216.34■□□□□ 0.213e-6■■■■□ 21.9
Retrieved 100 of 24,271 protein–RNA pairs in 284 ms