Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC21.23■□□□□ 0.99
RFX1P22670 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RFX1P22670 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC21.23■□□□□ 0.99
RFX1P22670 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC21.23■□□□□ 0.99
RFX1P22670 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC21.23■□□□□ 0.99
RFX1P22670 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC21.23■□□□□ 0.99
RFX1P22670 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
RFX1P22670 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RFX1P22670 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
RFX1P22670 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
RFX1P22670 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RFX1P22670 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC21.23■□□□□ 0.99
RFX1P22670 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RFX1P22670 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC21.22■□□□□ 0.99
RFX1P22670 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC21.22■□□□□ 0.99
RFX1P22670 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RFX1P22670 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RFX1P22670 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC21.22■□□□□ 0.99
RFX1P22670 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
RFX1P22670 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RFX1P22670 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC21.22■□□□□ 0.99
RFX1P22670 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
RFX1P22670 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
RFX1P22670 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
RFX1P22670 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RFX1P22670 DHDH-203ENST00000522614 776 ntTSL 5 BASIC21.22■□□□□ 0.99
RFX1P22670 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
RFX1P22670 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC21.22■□□□□ 0.99
RFX1P22670 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RFX1P22670 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC21.22■□□□□ 0.99
RFX1P22670 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
RFX1P22670 PWWP2AP1-201ENST00000429776 2273 ntBASIC21.22■□□□□ 0.99
RFX1P22670 AC116562.4-201ENST00000641316 2276 ntBASIC21.22■□□□□ 0.99
RFX1P22670 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC21.22■□□□□ 0.99
RFX1P22670 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC21.22■□□□□ 0.99
RFX1P22670 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RFX1P22670 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC21.21■□□□□ 0.99
RFX1P22670 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RFX1P22670 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
RFX1P22670 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
RFX1P22670 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
RFX1P22670 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
RFX1P22670 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RFX1P22670 RPS2P55-201ENST00000397318 883 ntBASIC21.21■□□□□ 0.99
RFX1P22670 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC21.21■□□□□ 0.99
RFX1P22670 AC107956.1-201ENST00000494359 873 ntBASIC21.21■□□□□ 0.99
RFX1P22670 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC21.21■□□□□ 0.99
RFX1P22670 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC21.21■□□□□ 0.99
RFX1P22670 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC21.21■□□□□ 0.99
RFX1P22670 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RFX1P22670 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC21.21■□□□□ 0.99
RFX1P22670 AC233702.5-201ENST00000584107 538 ntBASIC21.21■□□□□ 0.99
RFX1P22670 MIR4785-201ENST00000585005 73 ntBASIC21.21■□□□□ 0.99
RFX1P22670 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
RFX1P22670 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC21.21■□□□□ 0.99
RFX1P22670 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RFX1P22670 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RFX1P22670 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RFX1P22670 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RFX1P22670 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC21.21■□□□□ 0.99
RFX1P22670 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
RFX1P22670 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC21.2■□□□□ 0.99
RFX1P22670 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC21.2■□□□□ 0.98
RFX1P22670 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
RFX1P22670 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RFX1P22670 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
RFX1P22670 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
RFX1P22670 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC21.2■□□□□ 0.98
RFX1P22670 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
RFX1P22670 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC21.2■□□□□ 0.98
RFX1P22670 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC21.2■□□□□ 0.98
RFX1P22670 HES2-206ENST00000489730 730 ntTSL 2 BASIC21.2■□□□□ 0.98
RFX1P22670 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC21.2■□□□□ 0.98
RFX1P22670 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
RFX1P22670 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
RFX1P22670 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
RFX1P22670 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
RFX1P22670 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RFX1P22670 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
RFX1P22670 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC21.2■□□□□ 0.98
RFX1P22670 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC21.19■□□□□ 0.98
RFX1P22670 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RFX1P22670 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
RFX1P22670 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RFX1P22670 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC21.19■□□□□ 0.98
RFX1P22670 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC21.19■□□□□ 0.98
RFX1P22670 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC21.19■□□□□ 0.98
RFX1P22670 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
RFX1P22670 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC21.19■□□□□ 0.98
RFX1P22670 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
RFX1P22670 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC21.19■□□□□ 0.98
RFX1P22670 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC21.19■□□□□ 0.98
RFX1P22670 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
RFX1P22670 AC239809.2-201ENST00000415381 517 ntBASIC21.19■□□□□ 0.98
RFX1P22670 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC21.19■□□□□ 0.98
RFX1P22670 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC21.19■□□□□ 0.98
RFX1P22670 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC21.19■□□□□ 0.98
RFX1P22670 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
RFX1P22670 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
RFX1P22670 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC21.19■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms