Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 PFKL-212ENST00000628044 129 ntTSL 3 BASIC18.58■□□□□ 0.56
SDC1P18827 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SDC1P18827 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
SDC1P18827 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.58■□□□□ 0.56
SDC1P18827 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SDC1P18827 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SDC1P18827 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SDC1P18827 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.58■□□□□ 0.56
SDC1P18827 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SDC1P18827 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC18.57■□□□□ 0.56
SDC1P18827 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC18.57■□□□□ 0.56
SDC1P18827 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SDC1P18827 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SDC1P18827 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SDC1P18827 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC18.57■□□□□ 0.56
SDC1P18827 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
SDC1P18827 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SDC1P18827 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SDC1P18827 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SDC1P18827 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SDC1P18827 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SDC1P18827 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SDC1P18827 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SDC1P18827 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC18.57■□□□□ 0.56
SDC1P18827 SLC29A4P2-201ENST00000504749 1089 ntBASIC18.57■□□□□ 0.56
SDC1P18827 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
SDC1P18827 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC18.57■□□□□ 0.56
SDC1P18827 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC18.57■□□□□ 0.56
SDC1P18827 ZNF815P-204ENST00000434898 1737 ntBASIC18.57■□□□□ 0.56
SDC1P18827 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SDC1P18827 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SDC1P18827 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SDC1P18827 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SDC1P18827 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SDC1P18827 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC18.56■□□□□ 0.56
SDC1P18827 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SDC1P18827 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SDC1P18827 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SDC1P18827 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SDC1P18827 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SDC1P18827 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SDC1P18827 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SDC1P18827 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC18.56■□□□□ 0.56
SDC1P18827 PNMA6B-201ENST00000538162 1200 ntBASIC18.56■□□□□ 0.56
SDC1P18827 REXO2-208ENST00000539754 791 ntTSL 2 BASIC18.56■□□□□ 0.56
SDC1P18827 AL138781.1-201ENST00000566567 1274 ntBASIC18.56■□□□□ 0.56
SDC1P18827 AC083880.1-201ENST00000608266 535 ntBASIC18.56■□□□□ 0.56
SDC1P18827 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC18.56■□□□□ 0.56
SDC1P18827 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC18.56■□□□□ 0.56
SDC1P18827 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC18.56■□□□□ 0.56
SDC1P18827 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
SDC1P18827 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC18.56■□□□□ 0.56
SDC1P18827 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SDC1P18827 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SDC1P18827 GOLGA6L3-201ENST00000507199 1679 ntBASIC18.56■□□□□ 0.56
SDC1P18827 TEX21P-204ENST00000641479 1693 ntBASIC18.56■□□□□ 0.56
SDC1P18827 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SDC1P18827 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SDC1P18827 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC18.55■□□□□ 0.56
SDC1P18827 AC093503.3-201ENST00000624917 2352 ntBASIC18.55■□□□□ 0.56
SDC1P18827 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
SDC1P18827 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SDC1P18827 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC18.55■□□□□ 0.56
SDC1P18827 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SDC1P18827 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SDC1P18827 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SDC1P18827 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SDC1P18827 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC18.55■□□□□ 0.56
SDC1P18827 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC18.55■□□□□ 0.56
SDC1P18827 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC18.55■□□□□ 0.56
SDC1P18827 TK2-208ENST00000545043 1120 ntTSL 2 BASIC18.55■□□□□ 0.56
SDC1P18827 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC18.55■□□□□ 0.56
SDC1P18827 AC060766.5-201ENST00000590539 871 ntBASIC18.55■□□□□ 0.56
SDC1P18827 GXYLT1P5-201ENST00000614548 1189 ntBASIC18.55■□□□□ 0.56
SDC1P18827 AL121906.2-201ENST00000621597 723 ntBASIC18.55■□□□□ 0.56
SDC1P18827 GAMT-205ENST00000640762 751 ntTSL 5 BASIC18.55■□□□□ 0.56
SDC1P18827 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
SDC1P18827 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SDC1P18827 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC18.55■□□□□ 0.56
SDC1P18827 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC18.55■□□□□ 0.56
SDC1P18827 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SDC1P18827 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SDC1P18827 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SDC1P18827 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SDC1P18827 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC18.55■□□□□ 0.56
SDC1P18827 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
SDC1P18827 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
SDC1P18827 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SDC1P18827 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SDC1P18827 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC18.54■□□□□ 0.56
SDC1P18827 MAX-217ENST00000557277 728 ntTSL 3 BASIC18.54■□□□□ 0.56
SDC1P18827 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SDC1P18827 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC18.54■□□□□ 0.56
SDC1P18827 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC18.54■□□□□ 0.56
SDC1P18827 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC18.54■□□□□ 0.56
SDC1P18827 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC18.54■□□□□ 0.56
SDC1P18827 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SDC1P18827 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SDC1P18827 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC18.54■□□□□ 0.56
SDC1P18827 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms