Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL6A3P12111 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC20.48■□□□□ 0.87
COL6A3P12111 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC20.48■□□□□ 0.87
COL6A3P12111 AKR1C7P-201ENST00000305623 895 ntBASIC20.48■□□□□ 0.87
COL6A3P12111 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL6A3P12111 RFPL4AP1-201ENST00000530883 850 ntBASIC20.48■□□□□ 0.87
COL6A3P12111 LINC01465-201ENST00000408887 1940 ntBASIC20.48■□□□□ 0.87
COL6A3P12111 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC20.47■□□□□ 0.87
COL6A3P12111 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
COL6A3P12111 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL6A3P12111 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL6A3P12111 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC20.47■□□□□ 0.87
COL6A3P12111 TOB2P1-201ENST00000469761 992 ntBASIC20.47■□□□□ 0.87
COL6A3P12111 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC20.47■□□□□ 0.87
COL6A3P12111 AC138894.3-201ENST00000603787 634 ntBASIC20.47■□□□□ 0.87
COL6A3P12111 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL6A3P12111 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC20.47■□□□□ 0.87
COL6A3P12111 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL6A3P12111 LSM5-204ENST00000409909 740 ntTSL 2 BASIC20.47■□□□□ 0.87
COL6A3P12111 AC104819.1-201ENST00000504587 486 ntBASIC20.47■□□□□ 0.87
COL6A3P12111 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC20.47■□□□□ 0.87
COL6A3P12111 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC20.47■□□□□ 0.87
COL6A3P12111 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL6A3P12111 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC20.47■□□□□ 0.87
COL6A3P12111 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL6A3P12111 CYMP-203ENST00000474680 1263 ntBASIC20.46■□□□□ 0.87
COL6A3P12111 MOK-208ENST00000519058 917 ntTSL 2 BASIC20.46■□□□□ 0.87
COL6A3P12111 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC20.46■□□□□ 0.87
COL6A3P12111 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL6A3P12111 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC20.46■□□□□ 0.87
COL6A3P12111 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC20.46■□□□□ 0.87
COL6A3P12111 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC20.46■□□□□ 0.87
COL6A3P12111 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC20.46■□□□□ 0.87
COL6A3P12111 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC20.46■□□□□ 0.87
COL6A3P12111 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL6A3P12111 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL6A3P12111 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL6A3P12111 LHX6-205ENST00000464484 666 ntTSL 2 BASIC20.46■□□□□ 0.87
COL6A3P12111 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC20.46■□□□□ 0.87
COL6A3P12111 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
COL6A3P12111 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL6A3P12111 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.46■□□□□ 0.87
COL6A3P12111 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL6A3P12111 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COL6A3P12111 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL6A3P12111 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
COL6A3P12111 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
COL6A3P12111 GPX1P2-201ENST00000429271 606 ntBASIC20.45■□□□□ 0.86
COL6A3P12111 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC20.45■□□□□ 0.86
COL6A3P12111 AC080038.3-201ENST00000623346 1952 ntBASIC20.45■□□□□ 0.86
COL6A3P12111 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC20.45■□□□□ 0.86
COL6A3P12111 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL6A3P12111 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL6A3P12111 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
COL6A3P12111 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
COL6A3P12111 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL6A3P12111 UPF3AP3-201ENST00000420996 769 ntBASIC20.45■□□□□ 0.86
COL6A3P12111 AC134684.3-201ENST00000641758 218 ntBASIC20.45■□□□□ 0.86
COL6A3P12111 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COL6A3P12111 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COL6A3P12111 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL6A3P12111 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.44■□□□□ 0.86
COL6A3P12111 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC20.44■□□□□ 0.86
COL6A3P12111 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC20.44■□□□□ 0.86
COL6A3P12111 KRT8P26-201ENST00000534154 1276 ntBASIC20.44■□□□□ 0.86
COL6A3P12111 ABR-204ENST00000543210 1049 ntTSL 2 BASIC20.44■□□□□ 0.86
COL6A3P12111 CIB2-208ENST00000560618 804 ntTSL 2 BASIC20.44■□□□□ 0.86
COL6A3P12111 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL6A3P12111 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
COL6A3P12111 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL6A3P12111 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC20.44■□□□□ 0.86
COL6A3P12111 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
COL6A3P12111 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL6A3P12111 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC20.43■□□□□ 0.86
COL6A3P12111 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC20.43■□□□□ 0.86
COL6A3P12111 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL6A3P12111 GOLGA6L3-201ENST00000507199 1679 ntBASIC20.43■□□□□ 0.86
COL6A3P12111 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC20.43■□□□□ 0.86
COL6A3P12111 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL6A3P12111 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC20.43■□□□□ 0.86
COL6A3P12111 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL6A3P12111 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL6A3P12111 IGHV3-22-201ENST00000520721 359 ntBASIC20.43■□□□□ 0.86
COL6A3P12111 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC20.43■□□□□ 0.86
COL6A3P12111 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL6A3P12111 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL6A3P12111 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL6A3P12111 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL6A3P12111 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL6A3P12111 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
COL6A3P12111 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
COL6A3P12111 NMU-202ENST00000505262 693 ntTSL 3 BASIC20.42■□□□□ 0.86
COL6A3P12111 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL6A3P12111 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL6A3P12111 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
COL6A3P12111 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL6A3P12111 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC20.42■□□□□ 0.86
COL6A3P12111 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC20.42■□□□□ 0.86
COL6A3P12111 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL6A3P12111 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms