Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 PTBP1P-201ENST00000554374 1601 ntBASIC19.55■□□□□ 0.72
SHOX2O60902 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
SHOX2O60902 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
SHOX2O60902 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
SHOX2O60902 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
SHOX2O60902 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
SHOX2O60902 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
SHOX2O60902 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
SHOX2O60902 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SHOX2O60902 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC19.55■□□□□ 0.72
SHOX2O60902 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC19.55■□□□□ 0.72
SHOX2O60902 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC19.55■□□□□ 0.72
SHOX2O60902 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SHOX2O60902 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
SHOX2O60902 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
SHOX2O60902 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC19.55■□□□□ 0.72
SHOX2O60902 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SHOX2O60902 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SHOX2O60902 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC19.55■□□□□ 0.72
SHOX2O60902 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC19.55■□□□□ 0.72
SHOX2O60902 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SHOX2O60902 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC19.55■□□□□ 0.72
SHOX2O60902 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SHOX2O60902 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SHOX2O60902 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SHOX2O60902 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SHOX2O60902 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.54■□□□□ 0.72
SHOX2O60902 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
SHOX2O60902 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SHOX2O60902 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC19.54■□□□□ 0.72
SHOX2O60902 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SHOX2O60902 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
SHOX2O60902 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC19.54■□□□□ 0.72
SHOX2O60902 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
SHOX2O60902 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC19.54■□□□□ 0.72
SHOX2O60902 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SHOX2O60902 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SHOX2O60902 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC19.54■□□□□ 0.72
SHOX2O60902 AC126763.1-201ENST00000552015 2118 ntBASIC19.54■□□□□ 0.72
SHOX2O60902 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC19.54■□□□□ 0.72
SHOX2O60902 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SHOX2O60902 AC073592.3-201ENST00000625118 1834 ntBASIC19.54■□□□□ 0.72
SHOX2O60902 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
SHOX2O60902 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
SHOX2O60902 DUX4L19-201ENST00000557448 1267 ntBASIC19.54■□□□□ 0.72
SHOX2O60902 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
SHOX2O60902 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SHOX2O60902 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
SHOX2O60902 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SHOX2O60902 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.54■□□□□ 0.72
SHOX2O60902 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC19.54■□□□□ 0.72
SHOX2O60902 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC19.54■□□□□ 0.72
SHOX2O60902 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SHOX2O60902 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SHOX2O60902 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SHOX2O60902 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SHOX2O60902 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SHOX2O60902 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC19.54■□□□□ 0.72
SHOX2O60902 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SHOX2O60902 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC19.54■□□□□ 0.72
SHOX2O60902 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SHOX2O60902 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SHOX2O60902 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC19.53■□□□□ 0.72
SHOX2O60902 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
SHOX2O60902 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SHOX2O60902 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SHOX2O60902 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SHOX2O60902 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SHOX2O60902 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SHOX2O60902 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
SHOX2O60902 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
SHOX2O60902 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC19.53■□□□□ 0.72
SHOX2O60902 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
SHOX2O60902 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC19.53■□□□□ 0.72
SHOX2O60902 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC19.53■□□□□ 0.72
SHOX2O60902 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC19.53■□□□□ 0.72
SHOX2O60902 AC011298.3-201ENST00000615796 283 ntBASIC19.53■□□□□ 0.72
SHOX2O60902 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC19.53■□□□□ 0.72
SHOX2O60902 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
SHOX2O60902 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
SHOX2O60902 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SHOX2O60902 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC19.53■□□□□ 0.72
SHOX2O60902 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC19.53■□□□□ 0.72
SHOX2O60902 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC19.53■□□□□ 0.72
SHOX2O60902 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
SHOX2O60902 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SHOX2O60902 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SHOX2O60902 PCDHA12-202ENST00000613593 2588 ntBASIC19.52■□□□□ 0.72
SHOX2O60902 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
SHOX2O60902 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC19.52■□□□□ 0.72
SHOX2O60902 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SHOX2O60902 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SHOX2O60902 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SHOX2O60902 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SHOX2O60902 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SHOX2O60902 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC19.52■□□□□ 0.72
SHOX2O60902 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC19.52■□□□□ 0.72
SHOX2O60902 FAM21FP-204ENST00000608637 956 ntBASIC19.52■□□□□ 0.72
SHOX2O60902 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SHOX2O60902 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms