Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CLDN3O15551 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CLDN3O15551 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CLDN3O15551 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC21.34■■□□□ 1.01
CLDN3O15551 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC21.34■■□□□ 1.01
CLDN3O15551 FDX2-207ENST00000494368 584 ntTSL 4 BASIC21.34■■□□□ 1.01
CLDN3O15551 REXO2-216ENST00000544196 452 ntTSL 3 BASIC21.34■■□□□ 1.01
CLDN3O15551 AL353708.3-201ENST00000610272 989 ntBASIC21.34■■□□□ 1.01
CLDN3O15551 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CLDN3O15551 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
CLDN3O15551 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CLDN3O15551 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
CLDN3O15551 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CLDN3O15551 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CLDN3O15551 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CLDN3O15551 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
CLDN3O15551 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
CLDN3O15551 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC21.33■■□□□ 1.01
CLDN3O15551 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC21.33■■□□□ 1.01
CLDN3O15551 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC21.33■■□□□ 1.01
CLDN3O15551 KRT8P8-201ENST00000434750 1448 ntBASIC21.33■■□□□ 1.01
CLDN3O15551 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
CLDN3O15551 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
CLDN3O15551 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC21.33■■□□□ 1.01
CLDN3O15551 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC21.33■■□□□ 1.01
CLDN3O15551 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CLDN3O15551 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CLDN3O15551 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC21.33■■□□□ 1.01
CLDN3O15551 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC21.33■■□□□ 1.01
CLDN3O15551 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC21.33■■□□□ 1.01
CLDN3O15551 RPS15-203ENST00000586096 570 ntTSL 2 BASIC21.33■■□□□ 1.01
CLDN3O15551 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
CLDN3O15551 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
CLDN3O15551 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
CLDN3O15551 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC21.33■■□□□ 1
CLDN3O15551 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
CLDN3O15551 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC21.33■■□□□ 1
CLDN3O15551 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC21.32■■□□□ 1
CLDN3O15551 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
CLDN3O15551 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC21.32■■□□□ 1
CLDN3O15551 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CLDN3O15551 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CLDN3O15551 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC21.32■■□□□ 1
CLDN3O15551 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CLDN3O15551 SAPCD2P4-201ENST00000424595 1171 ntBASIC21.32■■□□□ 1
CLDN3O15551 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CLDN3O15551 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC21.32■■□□□ 1
CLDN3O15551 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
CLDN3O15551 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC21.32■■□□□ 1
CLDN3O15551 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC21.32■■□□□ 1
CLDN3O15551 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC21.32■■□□□ 1
CLDN3O15551 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC21.32■■□□□ 1
CLDN3O15551 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CLDN3O15551 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CLDN3O15551 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
CLDN3O15551 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
CLDN3O15551 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC21.31■■□□□ 1
CLDN3O15551 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC21.31■■□□□ 1
CLDN3O15551 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC21.31■■□□□ 1
CLDN3O15551 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CLDN3O15551 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
CLDN3O15551 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC21.31■■□□□ 1
CLDN3O15551 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CLDN3O15551 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CLDN3O15551 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC21.31■■□□□ 1
CLDN3O15551 NIFKP9-201ENST00000419265 221 ntBASIC21.31■■□□□ 1
CLDN3O15551 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC21.31■■□□□ 1
CLDN3O15551 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC21.31■■□□□ 1
CLDN3O15551 AC073195.1-201ENST00000607241 877 ntBASIC21.31■■□□□ 1
CLDN3O15551 AC113410.3-201ENST00000623366 203 ntBASIC21.31■■□□□ 1
CLDN3O15551 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC21.31■■□□□ 1
CLDN3O15551 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
CLDN3O15551 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CLDN3O15551 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CLDN3O15551 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC21.31■■□□□ 1
CLDN3O15551 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC21.31■■□□□ 1
CLDN3O15551 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC21.31■■□□□ 1
CLDN3O15551 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CLDN3O15551 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC21.31■■□□□ 1
CLDN3O15551 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CLDN3O15551 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
CLDN3O15551 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC21.3■■□□□ 1
CLDN3O15551 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC21.3■■□□□ 1
CLDN3O15551 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC21.3■■□□□ 1
CLDN3O15551 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
CLDN3O15551 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC21.3■■□□□ 1
CLDN3O15551 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
CLDN3O15551 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC21.3■■□□□ 1
CLDN3O15551 AL596275.1-201ENST00000423464 877 ntBASIC21.3■■□□□ 1
CLDN3O15551 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
CLDN3O15551 NME1-207ENST00000480143 964 ntTSL 2 BASIC21.3■■□□□ 1
CLDN3O15551 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
CLDN3O15551 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC21.3■■□□□ 1
CLDN3O15551 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CLDN3O15551 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC21.3■■□□□ 1
CLDN3O15551 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC21.3■■□□□ 1
CLDN3O15551 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC21.3■■□□□ 1
CLDN3O15551 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC21.3■■□□□ 1
CLDN3O15551 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CLDN3O15551 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC21.29■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms