Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC24.57■■□□□ 1.52
NPHP1O15259 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC24.57■■□□□ 1.52
NPHP1O15259 RNF152P1-201ENST00000397754 604 ntBASIC24.57■■□□□ 1.52
NPHP1O15259 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC24.57■■□□□ 1.52
NPHP1O15259 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC24.57■■□□□ 1.52
NPHP1O15259 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC24.57■■□□□ 1.52
NPHP1O15259 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC24.57■■□□□ 1.52
NPHP1O15259 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
NPHP1O15259 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
NPHP1O15259 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
NPHP1O15259 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC24.57■■□□□ 1.52
NPHP1O15259 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC24.57■■□□□ 1.52
NPHP1O15259 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
NPHP1O15259 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
NPHP1O15259 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
NPHP1O15259 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
NPHP1O15259 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
NPHP1O15259 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
NPHP1O15259 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
NPHP1O15259 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC24.56■■□□□ 1.52
NPHP1O15259 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
NPHP1O15259 METTL23-204ENST00000586752 904 ntTSL 2 BASIC24.56■■□□□ 1.52
NPHP1O15259 HLA-A-209ENST00000638375 975 ntBASIC24.56■■□□□ 1.52
NPHP1O15259 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC24.56■■□□□ 1.52
NPHP1O15259 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
NPHP1O15259 AL137060.1-201ENST00000618151 2648 ntBASIC24.56■■□□□ 1.52
NPHP1O15259 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
NPHP1O15259 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC24.56■■□□□ 1.52
NPHP1O15259 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC24.56■■□□□ 1.52
NPHP1O15259 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
NPHP1O15259 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC24.55■■□□□ 1.52
NPHP1O15259 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC24.55■■□□□ 1.52
NPHP1O15259 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
NPHP1O15259 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
NPHP1O15259 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC24.55■■□□□ 1.52
NPHP1O15259 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC24.55■■□□□ 1.52
NPHP1O15259 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
NPHP1O15259 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC24.55■■□□□ 1.52
NPHP1O15259 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
NPHP1O15259 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC24.55■■□□□ 1.52
NPHP1O15259 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC24.55■■□□□ 1.52
NPHP1O15259 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
NPHP1O15259 AC007225.1-201ENST00000566331 1836 ntBASIC24.55■■□□□ 1.52
NPHP1O15259 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC24.55■■□□□ 1.52
NPHP1O15259 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
NPHP1O15259 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC24.55■■□□□ 1.52
NPHP1O15259 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC24.55■■□□□ 1.52
NPHP1O15259 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
NPHP1O15259 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC24.55■■□□□ 1.52
NPHP1O15259 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC24.55■■□□□ 1.52
NPHP1O15259 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC24.54■■□□□ 1.52
NPHP1O15259 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC24.54■■□□□ 1.52
NPHP1O15259 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
NPHP1O15259 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC24.54■■□□□ 1.52
NPHP1O15259 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
NPHP1O15259 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
NPHP1O15259 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC24.54■■□□□ 1.52
NPHP1O15259 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
NPHP1O15259 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC24.54■■□□□ 1.52
NPHP1O15259 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC24.54■■□□□ 1.52
NPHP1O15259 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
NPHP1O15259 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC24.54■■□□□ 1.52
NPHP1O15259 AC008040.2-201ENST00000461049 708 ntBASIC24.54■■□□□ 1.52
NPHP1O15259 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC24.54■■□□□ 1.52
NPHP1O15259 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC24.54■■□□□ 1.52
NPHP1O15259 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC24.54■■□□□ 1.52
NPHP1O15259 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
NPHP1O15259 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC24.54■■□□□ 1.52
NPHP1O15259 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC24.54■■□□□ 1.52
NPHP1O15259 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC24.53■■□□□ 1.52
NPHP1O15259 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
NPHP1O15259 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
NPHP1O15259 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC24.53■■□□□ 1.52
NPHP1O15259 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC24.53■■□□□ 1.52
NPHP1O15259 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC24.53■■□□□ 1.52
NPHP1O15259 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC24.53■■□□□ 1.52
NPHP1O15259 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC24.53■■□□□ 1.52
NPHP1O15259 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC24.53■■□□□ 1.52
NPHP1O15259 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC24.53■■□□□ 1.52
NPHP1O15259 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC24.53■■□□□ 1.52
NPHP1O15259 SLC25A1P2-201ENST00000430693 912 ntBASIC24.53■■□□□ 1.52
NPHP1O15259 PTPA-216ENST00000432651 857 ntTSL 2 BASIC24.53■■□□□ 1.52
NPHP1O15259 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC24.53■■□□□ 1.52
NPHP1O15259 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC24.53■■□□□ 1.52
NPHP1O15259 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC24.53■■□□□ 1.52
NPHP1O15259 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC24.53■■□□□ 1.52
NPHP1O15259 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC24.53■■□□□ 1.52
NPHP1O15259 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC24.53■■□□□ 1.52
NPHP1O15259 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC24.53■■□□□ 1.52
NPHP1O15259 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
NPHP1O15259 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC24.52■■□□□ 1.52
NPHP1O15259 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC24.52■■□□□ 1.52
NPHP1O15259 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
NPHP1O15259 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
NPHP1O15259 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC24.52■■□□□ 1.52
NPHP1O15259 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC24.52■■□□□ 1.52
NPHP1O15259 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
NPHP1O15259 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC24.52■■□□□ 1.52
NPHP1O15259 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
NPHP1O15259 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms