Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRAV40A0A0B4J280 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRAV40A0A0B4J280 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRAV40A0A0B4J280 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRAV40A0A0B4J280 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TRAV40A0A0B4J280 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRAV40A0A0B4J280 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC15.89■□□□□ 0.13
TRAV40A0A0B4J280 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC15.89■□□□□ 0.13
TRAV40A0A0B4J280 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
TRAV40A0A0B4J280 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TRAV40A0A0B4J280 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRAV40A0A0B4J280 MIR1224-201ENST00000408193 85 ntBASIC15.89■□□□□ 0.13
TRAV40A0A0B4J280 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC15.89■□□□□ 0.13
TRAV40A0A0B4J280 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TRAV40A0A0B4J280 AC004980.1-204ENST00000429707 299 ntBASIC15.89■□□□□ 0.13
TRAV40A0A0B4J280 B3GAT3P1-201ENST00000471720 806 ntBASIC15.89■□□□□ 0.13
TRAV40A0A0B4J280 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TRAV40A0A0B4J280 NAPSB-206ENST00000562112 1266 ntBASIC15.89■□□□□ 0.13
TRAV40A0A0B4J280 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC15.89■□□□□ 0.13
TRAV40A0A0B4J280 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
TRAV40A0A0B4J280 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRAV40A0A0B4J280 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC15.89■□□□□ 0.13
TRAV40A0A0B4J280 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRAV40A0A0B4J280 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TRAV40A0A0B4J280 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
TRAV40A0A0B4J280 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRAV40A0A0B4J280 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TRAV40A0A0B4J280 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRAV40A0A0B4J280 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRAV40A0A0B4J280 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC15.88■□□□□ 0.13
TRAV40A0A0B4J280 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
TRAV40A0A0B4J280 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRAV40A0A0B4J280 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRAV40A0A0B4J280 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TRAV40A0A0B4J280 FEM1AP1-201ENST00000431297 1995 ntBASIC15.88■□□□□ 0.13
TRAV40A0A0B4J280 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRAV40A0A0B4J280 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRAV40A0A0B4J280 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRAV40A0A0B4J280 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRAV40A0A0B4J280 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRAV40A0A0B4J280 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRAV40A0A0B4J280 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRAV40A0A0B4J280 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC15.88■□□□□ 0.13
TRAV40A0A0B4J280 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRAV40A0A0B4J280 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC15.88■□□□□ 0.13
TRAV40A0A0B4J280 FITM1-202ENST00000559294 800 ntBASIC15.88■□□□□ 0.13
TRAV40A0A0B4J280 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC15.88■□□□□ 0.13
TRAV40A0A0B4J280 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC15.88■□□□□ 0.13
TRAV40A0A0B4J280 AC145285.6-201ENST00000604632 637 ntBASIC15.88■□□□□ 0.13
TRAV40A0A0B4J280 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC15.88■□□□□ 0.13
TRAV40A0A0B4J280 HLA-A-209ENST00000638375 975 ntBASIC15.88■□□□□ 0.13
TRAV40A0A0B4J280 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC15.88■□□□□ 0.13
TRAV40A0A0B4J280 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC15.88■□□□□ 0.13
TRAV40A0A0B4J280 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRAV40A0A0B4J280 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRAV40A0A0B4J280 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC15.88■□□□□ 0.13
TRAV40A0A0B4J280 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TRAV40A0A0B4J280 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRAV40A0A0B4J280 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC15.88■□□□□ 0.13
TRAV40A0A0B4J280 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRAV40A0A0B4J280 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRAV40A0A0B4J280 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRAV40A0A0B4J280 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC15.87■□□□□ 0.13
TRAV40A0A0B4J280 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRAV40A0A0B4J280 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRAV40A0A0B4J280 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC15.87■□□□□ 0.13
TRAV40A0A0B4J280 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
TRAV40A0A0B4J280 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC15.87■□□□□ 0.13
TRAV40A0A0B4J280 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRAV40A0A0B4J280 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC15.87■□□□□ 0.13
TRAV40A0A0B4J280 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
TRAV40A0A0B4J280 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
TRAV40A0A0B4J280 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC15.87■□□□□ 0.13
TRAV40A0A0B4J280 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
TRAV40A0A0B4J280 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC15.87■□□□□ 0.13
TRAV40A0A0B4J280 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
TRAV40A0A0B4J280 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
TRAV40A0A0B4J280 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRAV40A0A0B4J280 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
TRAV40A0A0B4J280 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC15.87■□□□□ 0.13
TRAV40A0A0B4J280 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC15.87■□□□□ 0.13
TRAV40A0A0B4J280 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC15.87■□□□□ 0.13
TRAV40A0A0B4J280 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC15.87■□□□□ 0.13
TRAV40A0A0B4J280 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC15.87■□□□□ 0.13
TRAV40A0A0B4J280 GRAMD4P8-201ENST00000605465 1115 ntBASIC15.87■□□□□ 0.13
TRAV40A0A0B4J280 DGCR10-201ENST00000609839 495 ntBASIC15.87■□□□□ 0.13
TRAV40A0A0B4J280 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC15.87■□□□□ 0.13
TRAV40A0A0B4J280 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
TRAV40A0A0B4J280 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
TRAV40A0A0B4J280 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRAV40A0A0B4J280 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
TRAV40A0A0B4J280 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC15.87■□□□□ 0.13
TRAV40A0A0B4J280 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC15.87■□□□□ 0.13
TRAV40A0A0B4J280 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC15.87■□□□□ 0.13
TRAV40A0A0B4J280 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRAV40A0A0B4J280 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
TRAV40A0A0B4J280 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRAV40A0A0B4J280 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
TRAV40A0A0B4J280 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRAV40A0A0B4J280 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms