Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC17.39■□□□□ 0.375e-7■■■■■ 27.7
YBX3P16989 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC17.17■□□□□ 0.345e-7■■■■■ 27.7
YBX3P16989 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC16.87■□□□□ 0.295e-7■■■■■ 27.7
YBX3P16989 HNF1A-203ENST00000402929 3002 ntTSL 216.04■□□□□ 0.165e-7■■■■■ 27.7
YBX3P16989 HNF1A-207ENST00000540108 3039 ntTSL 1 (best)15.98■□□□□ 0.155e-7■■■■■ 27.7
YBX3P16989 HNF1A-214ENST00000560968 3030 ntTSL 1 (best)15.87■□□□□ 0.135e-7■■■■■ 27.7
YBX3P16989 HNF1A-204ENST00000535955 434 ntTSL 1 (best)14.73□□□□□ -0.055e-7■■■■■ 27.7
YBX3P16989 HNF1A-201ENST00000257555 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.055e-7■■■■■ 27.7
YBX3P16989 HNF1A-208ENST00000541395 3332 ntTSL 2 BASIC14.2□□□□□ -0.145e-7■■■■■ 27.7
YBX3P16989 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.677e-8■■■■■ 27.7
YBX3P16989 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.716e-13■■■■■ 27.7
YBX3P16989 MRPL17-202ENST00000529958 1002 ntTSL 221.18■□□□□ 0.986e-9■■■■■ 27.6
YBX3P16989 MRPL17-203ENST00000532203 448 ntTSL 318.48■□□□□ 0.556e-9■■■■■ 27.6
YBX3P16989 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC17.76■□□□□ 0.436e-9■■■■■ 27.6
YBX3P16989 PISD-212ENST00000473770 2378 ntTSL 516.57■□□□□ 0.244e-8■■■■■ 27.6
YBX3P16989 MRPL17-201ENST00000288937 1969 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.096e-9■■■■■ 27.6
YBX3P16989 PISD-211ENST00000460723 2534 ntTSL 1 (best)14.32□□□□□ -0.124e-8■■■■■ 27.6
YBX3P16989 PISD-203ENST00000397500 2194 ntTSL 5 BASIC13.76□□□□□ -0.214e-8■■■■■ 27.6
YBX3P16989 PISD-208ENST00000437808 2264 ntTSL 513.19□□□□□ -0.34e-8■■■■■ 27.6
YBX3P16989 ATP6V1D-207ENST00000555012 582 ntTSL 312.46□□□□□ -0.416e-9■■■■■ 27.6
YBX3P16989 ATP6V1D-203ENST00000553687 627 ntTSL 312.46□□□□□ -0.416e-9■■■■■ 27.6
YBX3P16989 ATXN10-204ENST00000435026 653 ntTSL 312.37□□□□□ -0.436e-9■■■■■ 27.6
YBX3P16989 PISD-201ENST00000266095 2655 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.494e-8■■■■■ 27.6
YBX3P16989 MRPL17-204ENST00000532676 303 ntTSL 310.83□□□□□ -0.686e-9■■■■■ 27.6
YBX3P16989 ATP6V1D-214ENST00000557244 395 ntTSL 29.83□□□□□ -0.846e-9■■■■■ 27.6
YBX3P16989 ATXN10-205ENST00000451241 514 ntTSL 37.37□□□□□ -1.236e-9■■■■■ 27.6
YBX3P16989 ATP6V1D-213ENST00000556058 551 ntTSL 36.33□□□□□ -1.46e-9■■■■■ 27.6
YBX3P16989 ATP6V1D-208ENST00000555335 585 ntTSL 26.33□□□□□ -1.46e-9■■■■■ 27.6
YBX3P16989 PIAS3-208ENST00000484423 1042 ntTSL 216.79■□□□□ 0.287e-8■■■■■ 27.6
YBX3P16989 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.77■□□□□ 0.287e-8■■■■■ 27.6
YBX3P16989 PIAS3-204ENST00000393046 952 ntTSL 216.49■□□□□ 0.237e-8■■■■■ 27.6
YBX3P16989 PIAS3-209ENST00000498436 1142 ntTSL 515.85■□□□□ 0.137e-8■■■■■ 27.6
YBX3P16989 PIAS3-203ENST00000393045 2901 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.237e-8■■■■■ 27.6
YBX3P16989 PIAS3-202ENST00000369299 1235 ntTSL 213.25□□□□□ -0.297e-8■■■■■ 27.6
YBX3P16989 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC15.04■□□□□ -07e-8■■■■■ 27.6
YBX3P16989 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.177e-8■■■■■ 27.6
YBX3P16989 PIP5K1B-207ENST00000478500 3335 ntTSL 1 (best)5.62□□□□□ -1.517e-8■■■■■ 27.6
YBX3P16989 DSCR3-206ENST00000475009 715 ntTSL 221.4■■□□□ 1.026e-9■■■■■ 27.6
YBX3P16989 DSCR3-208ENST00000480452 526 ntTSL 29.06□□□□□ -0.966e-9■■■■■ 27.6
YBX3P16989 DSCR3-210ENST00000492514 318 ntTSL 34.69□□□□□ -1.666e-9■■■■■ 27.6
YBX3P16989 DCTN2-224ENST00000552390 842 ntTSL 510.79□□□□□ -0.689e-7■■■■■ 27.6
YBX3P16989 NOLC1-204ENST00000464969 2288 ntTSL 214.21□□□□□ -0.145e-7■■■■■ 27.6
YBX3P16989 NOLC1-207ENST00000488254 2441 ntAPPRIS ALT1 TSL 1 (best) BASIC12.31□□□□□ -0.445e-7■■■■■ 27.6
YBX3P16989 NOLC1-208ENST00000603946 3217 ntTSL 1 (best)9.95□□□□□ -0.825e-7■■■■■ 27.6
YBX3P16989 NOLC1-202ENST00000405356 3967 ntTSL 1 (best) BASIC9.56□□□□□ -0.885e-7■■■■■ 27.6
YBX3P16989 NOLC1-209ENST00000605788 3932 ntAPPRIS P3 TSL 1 (best) BASIC8.68□□□□□ -1.025e-7■■■■■ 27.6
YBX3P16989 NOLC1-201ENST00000370007 3727 ntTSL 1 (best)6.95□□□□□ -1.35e-7■■■■■ 27.6
YBX3P16989 PRKD3-208ENST00000475912 760 ntTSL 37.95□□□□□ -1.147e-8■■■■■ 27.5
YBX3P16989 ARIH1-203ENST00000561987 403 ntTSL 36.84□□□□□ -1.311e-8■■■■■ 27.5
YBX3P16989 CHST15-204ENST00000476765 436 ntTSL 39.67□□□□□ -0.867e-10■■■■■ 27.5
YBX3P16989 TMEM99-202ENST00000436612 854 ntAPPRIS ALT2 TSL 212.5□□□□□ -0.413e-7■■■■■ 27.4
YBX3P16989 TMEM99-204ENST00000622451 2073 ntAPPRIS P2 TSL 2 BASIC8.39□□□□□ -1.073e-7■■■■■ 27.4
YBX3P16989 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC7.44□□□□□ -1.223e-7■■■■■ 27.4
YBX3P16989 COQ4-205ENST00000609948 956 ntTSL 2 BASIC21.28■■□□□ 11e-8■■■■■ 27.4
YBX3P16989 COQ4-204ENST00000608951 781 ntTSL 2 BASIC17.74■□□□□ 0.431e-8■■■■■ 27.4
YBX3P16989 COQ4-201ENST00000300452 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.431e-8■■■■■ 27.4
YBX3P16989 COQ4-202ENST00000372875 928 ntTSL 2 BASIC16.27■□□□□ 0.21e-8■■■■■ 27.4
YBX3P16989 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.749e-17■■■■■ 27.4
YBX3P16989 SPART-203ENST00000451493 4944 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.449e-17■■■■■ 27.4
YBX3P16989 SPART-207ENST00000482146 583 ntTSL 57.58□□□□□ -1.29e-17■■■■■ 27.4
YBX3P16989 SPART-205ENST00000475603 675 ntTSL 27.18□□□□□ -1.269e-17■■■■■ 27.4
YBX3P16989 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.559e-17■■■■■ 27.4
YBX3P16989 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.579e-17■■■■■ 27.4
YBX3P16989 SLC31A1-201ENST00000374212 4744 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.994e-8■■■■■ 27.4
YBX3P16989 MDN1-204ENST00000487831 689 ntTSL 27.44□□□□□ -1.226e-7■■■■■ 27.4
YBX3P16989 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC15.13■□□□□ 0.014e-7■■■■■ 27.3
YBX3P16989 USP38-201ENST00000307017 7009 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.364e-7■■■■■ 27.3
YBX3P16989 USP38-203ENST00000511739 6376 ntTSL 25.85□□□□□ -1.474e-7■■■■■ 27.3
YBX3P16989 ABO-201ENST00000453660 6341 ntTSL 1 (best)13.13□□□□□ -0.312e-9■■■■■ 27.3
YBX3P16989 CAPN2-207ENST00000480581 513 ntTSL 223.4■■□□□ 1.341e-10■■■■■ 27.3
YBX3P16989 YIPF3-211ENST00000503147 652 ntTSL 215.9■□□□□ 0.142e-9■■■■■ 27.3
YBX3P16989 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC17.53■□□□□ 0.42e-7■■■■■ 27.3
YBX3P16989 BLMH-205ENST00000578090 1483 ntTSL 217.86■□□□□ 0.453e-10■■■■■ 27.3
YBX3P16989 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.13e-10■■■■■ 27.3
YBX3P16989 NUP205-203ENST00000462316 571 ntTSL 47.22□□□□□ -1.258e-15■■■■■ 27.2
YBX3P16989 MAPK9-211ENST00000523583 657 ntTSL 536.38■■■■□ 3.418e-7■■■■■ 27.2
YBX3P16989 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC37.87■■■■□ 3.653e-8■■■■■ 27.2
YBX3P16989 STRAP-202ENST00000419869 1866 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.053e-10■■■■■ 27.2
YBX3P16989 STRAP-201ENST00000025399 1442 ntTSL 2 BASIC13.13□□□□□ -0.313e-10■■■■■ 27.2
YBX3P16989 STRAP-206ENST00000541731 1698 ntTSL 211.92□□□□□ -0.53e-10■■■■■ 27.2
YBX3P16989 AL117329.1-201ENST00000423737 1815 ntTSL 2 BASIC12.88□□□□□ -0.352e-6■■■■■ 27.2
YBX3P16989 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.572e-7■■■■■ 27.1
YBX3P16989 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC25.02■■□□□ 1.61e-12■■■■■ 27.1
YBX3P16989 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC19.67■□□□□ 0.741e-12■■■■■ 27.1
YBX3P16989 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.241e-12■■■■■ 27.1
YBX3P16989 FAM83A-208ENST00000536633 3701 ntTSL 2 BASIC11.11□□□□□ -0.631e-12■■■■■ 27.1
YBX3P16989 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.81e-8■■■■■ 27.1
YBX3P16989 SLC38A10-210ENST00000573058 1627 nt29.36■■■□□ 2.293e-6■■■■■ 27.1
YBX3P16989 SLC38A10-206ENST00000540966 896 ntTSL 322.91■■□□□ 1.263e-6■■■■■ 27.1
YBX3P16989 SLC38A10-211ENST00000576151 774 ntTSL 221.6■■□□□ 1.053e-6■■■■■ 27.1
YBX3P16989 SLC38A10-207ENST00000542075 2903 ntTSL 215.88■□□□□ 0.133e-6■■■■■ 27.1
YBX3P16989 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.083e-6■■■■■ 27.1
YBX3P16989 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC26.51■■□□□ 1.831e-8■■■■■ 27.1
YBX3P16989 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.81e-8■■■■■ 27.1
YBX3P16989 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC23.3■■□□□ 1.321e-8■■■■■ 27.1
YBX3P16989 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC21.32■■□□□ 11e-8■■■■■ 27.1
YBX3P16989 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC21.13■□□□□ 0.971e-8■■■■■ 27.1
YBX3P16989 EHMT1-252ENST00000640639 1259 ntTSL 519.34■□□□□ 0.691e-8■■■■■ 27.1
YBX3P16989 EHMT1-251ENST00000638071 1710 ntTSL 518.2■□□□□ 0.51e-8■■■■■ 27.1
YBX3P16989 C1orf174-203ENST00000486765 2517 ntTSL 516.83■□□□□ 0.281e-8■■■■■ 27.1
Retrieved 100 of 29,075 protein–RNA pairs in 158.6 ms