Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 ERAL1-201ENST00000254928 1925 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.211e-9■■■■■ 35.2
SMNDC1O75940 MUS81-205ENST00000525224 285 ntTSL 512.68□□□□□ -0.381e-9■■■■■ 35.2
SMNDC1O75940 ERAL1-203ENST00000461894 1628 ntTSL 1 (best)12.45□□□□□ -0.421e-9■■■■■ 35.2
SMNDC1O75940 ERAL1-202ENST00000412138 1039 ntTSL 512.13□□□□□ -0.471e-9■■■■■ 35.2
SMNDC1O75940 ERAL1-207ENST00000580917 850 ntTSL 311.95□□□□□ -0.51e-9■■■■■ 35.2
SMNDC1O75940 MUS81-214ENST00000531905 3420 ntTSL 511.66□□□□□ -0.541e-9■■■■■ 35.2
SMNDC1O75940 ERAL1-204ENST00000471992 1508 ntTSL 58.5□□□□□ -1.051e-9■■■■■ 35.2
SMNDC1O75940 ERAL1-205ENST00000577942 698 ntTSL 24.5□□□□□ -1.691e-9■■■■■ 35.2
SMNDC1O75940 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC14.76□□□□□ -0.051e-16■■■■■ 35
SMNDC1O75940 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC14.28□□□□□ -0.121e-16■■■■■ 35
SMNDC1O75940 HDAC8-207ENST00000373573 2014 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.181e-16■■■■■ 35
SMNDC1O75940 HDAC8-205ENST00000373568 1037 ntTSL 511.7□□□□□ -0.541e-16■■■■■ 35
SMNDC1O75940 HDAC8-216ENST00000470998 329 ntTSL 35.91□□□□□ -1.461e-16■■■■■ 35
SMNDC1O75940 RNU2-68P-201ENST00000410878 191 ntBASIC4.5□□□□□ -1.691e-16■■■■■ 35
SMNDC1O75940 PIM3-202ENST00000467480 723 ntTSL 228.35■■■□□ 2.135e-10■■■■■ 34.9
SMNDC1O75940 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.734e-19■■■■■ 34.9
SMNDC1O75940 IDH1-206ENST00000451391 563 ntTSL 317.06■□□□□ 0.324e-19■■■■■ 34.9
SMNDC1O75940 IDH1-202ENST00000415282 942 ntTSL 215.79■□□□□ 0.124e-19■■■■■ 34.9
SMNDC1O75940 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC14.66□□□□□ -0.065e-10■■■■■ 34.9
SMNDC1O75940 IDH1-204ENST00000417583 702 ntTSL 412.57□□□□□ -0.44e-19■■■■■ 34.9
SMNDC1O75940 IDH1-201ENST00000345146 2382 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.524e-19■■■■■ 34.9
SMNDC1O75940 IDH1-207ENST00000462386 1614 ntTSL 211.65□□□□□ -0.544e-19■■■■■ 34.9
SMNDC1O75940 IDH1-208ENST00000481557 556 ntTSL 210.93□□□□□ -0.664e-19■■■■■ 34.9
SMNDC1O75940 XPR1-202ENST00000367590 8474 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.695e-10■■■■■ 34.9
SMNDC1O75940 IDH1-203ENST00000415913 2441 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.844e-19■■■■■ 34.9
SMNDC1O75940 U6.114-201ENST00000636407 96 ntBASIC5.63□□□□□ -1.515e-10■■■■■ 34.9
SMNDC1O75940 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC24.01■■□□□ 1.433e-6■■■■■ 34.7
SMNDC1O75940 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC17.6■□□□□ 0.413e-6■■■■■ 34.7
SMNDC1O75940 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC17■□□□□ 0.313e-6■■■■■ 34.7
SMNDC1O75940 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC14.32□□□□□ -0.123e-6■■■■■ 34.7
SMNDC1O75940 AP2M1-212ENST00000461733 1470 ntTSL 213.22□□□□□ -0.293e-6■■■■■ 34.7
SMNDC1O75940 AP2M1-222ENST00000621863 1305 ntAPPRIS ALT1 TSL 5 BASIC9.34□□□□□ -0.913e-6■■■■■ 34.7
SMNDC1O75940 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC7.56□□□□□ -1.25e-18■■■■■ 34.6
SMNDC1O75940 ZNF207-201ENST00000321233 2283 ntTSL 1 (best) BASIC9.62□□□□□ -0.871e-17■■■■■ 34.4
SMNDC1O75940 ZNF207-207ENST00000577908 4672 ntAPPRIS ALT1 TSL 5 BASIC9.17□□□□□ -0.941e-17■■■■■ 34.4
SMNDC1O75940 ZNF207-204ENST00000394673 2124 ntAPPRIS P3 TSL 1 (best) BASIC9.07□□□□□ -0.961e-17■■■■■ 34.4
SMNDC1O75940 ZNF207-202ENST00000342555 1905 ntTSL 5 BASIC8.63□□□□□ -1.031e-17■■■■■ 34.4
SMNDC1O75940 ZNF207-205ENST00000394679 847 ntTSL 36.86□□□□□ -1.311e-17■■■■■ 34.4
SMNDC1O75940 ZNF207-213ENST00000581531 3560 ntTSL 56.69□□□□□ -1.341e-17■■■■■ 34.4
SMNDC1O75940 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC5.05□□□□□ -1.61e-17■■■■■ 34.4
SMNDC1O75940 ZNF207-209ENST00000579416 396 ntTSL 24.88□□□□□ -1.631e-17■■■■■ 34.4
SMNDC1O75940 NOP58-208ENST00000488403 871 ntTSL 213.14□□□□□ -0.311e-27■■■■■ 34.3
SMNDC1O75940 NOP58-202ENST00000426814 655 ntTSL 213.06□□□□□ -0.321e-27■■■■■ 34.3
SMNDC1O75940 NOP58-205ENST00000472050 582 ntTSL 310.13□□□□□ -0.791e-27■■■■■ 34.3
SMNDC1O75940 NOP58-204ENST00000467734 638 ntTSL 510.1□□□□□ -0.791e-27■■■■■ 34.3
SMNDC1O75940 LARP1-204ENST00000518297 2630 ntTSL 522.61■■□□□ 1.216e-8■■■■■ 34.3
SMNDC1O75940 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.896e-8■■■■■ 34.3
SMNDC1O75940 LARP1-215ENST00000524248 2128 ntTSL 518.86■□□□□ 0.616e-8■■■■■ 34.3
SMNDC1O75940 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.146e-8■■■■■ 34.3
SMNDC1O75940 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.126e-8■■■■■ 34.3
SMNDC1O75940 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.116e-8■■■■■ 34.3
SMNDC1O75940 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.076e-8■■■■■ 34.3
SMNDC1O75940 PVR-201ENST00000187830 3132 ntTSL 215.13■□□□□ 0.016e-8■■■■■ 34.3
SMNDC1O75940 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.086e-8■■■■■ 34.3
SMNDC1O75940 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC14.45□□□□□ -0.16e-8■■■■■ 34.3
SMNDC1O75940 LARP1-201ENST00000336314 6595 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.516e-8■■■■■ 34.3
SMNDC1O75940 LARP1-206ENST00000518677 827 ntTSL 511.88□□□□□ -0.516e-8■■■■■ 34.3
SMNDC1O75940 PVR-206ENST00000587785 356 ntTSL 39.69□□□□□ -0.866e-8■■■■■ 34.3
SMNDC1O75940 TAF4-207ENST00000608887 284 ntTSL 48.36□□□□□ -1.076e-8■■■■■ 34.3
SMNDC1O75940 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.088e-14■■■■■ 34.3
SMNDC1O75940 DNAJB12-202ENST00000394903 3198 ntTSL 1 (best) BASIC13.69□□□□□ -0.222e-7■■■■■ 34.3
SMNDC1O75940 DNAJB12-201ENST00000338820 4360 ntTSL 2 BASIC13.68□□□□□ -0.222e-7■■■■■ 34.3
SMNDC1O75940 DNAJB12-204ENST00000461919 2369 ntTSL 2 BASIC13.5□□□□□ -0.252e-7■■■■■ 34.3
SMNDC1O75940 DNAJB12-203ENST00000444643 3278 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.32e-7■■■■■ 34.3
SMNDC1O75940 XIST-206ENST00000434839 2865 ntTSL 5 BASIC9.27□□□□□ -0.932e-7■■■■■ 34.3
SMNDC1O75940 XIST-211ENST00000635841 1734 ntTSL 5 BASIC7.94□□□□□ -1.142e-7■■■■■ 34.3
SMNDC1O75940 OSTC-205ENST00000613215 876 ntTSL 2 BASIC7.82□□□□□ -1.168e-14■■■■■ 34.3
SMNDC1O75940 OSTC-204ENST00000512478 663 ntTSL 5 BASIC7.17□□□□□ -1.268e-14■■■■■ 34.3
SMNDC1O75940 OSTC-203ENST00000510556 331 ntTSL 56.84□□□□□ -1.318e-14■■■■■ 34.3
SMNDC1O75940 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC5.26□□□□□ -1.572e-7■■■■■ 34.3
SMNDC1O75940 RNU6-431P-201ENST00000383874 107 ntBASIC-0.45□□□□□ -2.488e-14■■■■■ 34.3
SMNDC1O75940 FLCN-205ENST00000417064 757 ntTSL 218.74■□□□□ 0.591e-8■■■■■ 34.2
SMNDC1O75940 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC17.71■□□□□ 0.421e-8■■■■■ 34.2
SMNDC1O75940 FLCN-204ENST00000389171 2523 ntTSL 217.27■□□□□ 0.361e-8■■■■■ 34.2
SMNDC1O75940 FLCN-202ENST00000389168 3359 ntTSL 211.97□□□□□ -0.491e-8■■■■■ 34.2
SMNDC1O75940 FLCN-206ENST00000461699 243 ntTSL 36.38□□□□□ -1.391e-8■■■■■ 34.2
SMNDC1O75940 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC22.35■■□□□ 1.171e-9■■■■■ 34.1
SMNDC1O75940 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.011e-9■■■■■ 34.1
SMNDC1O75940 FBXL6-203ENST00000524492 2007 ntTSL 218.81■□□□□ 0.61e-9■■■■■ 34.1
SMNDC1O75940 FBXL6-208ENST00000530142 3108 ntTSL 1 (best)17.39■□□□□ 0.371e-9■■■■■ 34.1
SMNDC1O75940 FBXL6-207ENST00000529279 852 ntTSL 212.26□□□□□ -0.451e-9■■■■■ 34.1
SMNDC1O75940 OPLAH-201ENST00000527993 635 ntTSL 520.02■□□□□ 0.82e-9■■■■■ 34
SMNDC1O75940 RNU2-29P-201ENST00000410423 189 ntBASIC5.72□□□□□ -1.492e-9■■■■■ 34
SMNDC1O75940 DHX38-214ENST00000579387 2258 ntTSL 518.09■□□□□ 0.499e-7■■■■■ 34
SMNDC1O75940 DHX38-201ENST00000268482 4608 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.279e-7■■■■■ 34
SMNDC1O75940 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC16.96■□□□□ 0.319e-10■■■■■ 33.9
SMNDC1O75940 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC16.64■□□□□ 0.259e-10■■■■■ 33.9
SMNDC1O75940 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.189e-10■■■■■ 33.9
SMNDC1O75940 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.139e-10■■■■■ 33.9
SMNDC1O75940 KIAA0368-202ENST00000338205 7078 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.429e-10■■■■■ 33.9
SMNDC1O75940 RNU6-42P-201ENST00000384165 107 ntBASIC0.89□□□□□ -2.272e-18■■■■■ 33.9
SMNDC1O75940 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC14.41□□□□□ -0.12e-65■■■■■ 33.9
SMNDC1O75940 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC14.41□□□□□ -0.12e-65■■■■■ 33.9
SMNDC1O75940 SNHG8-204ENST00000602573 570 ntTSL 26.94□□□□□ -1.32e-65■■■■■ 33.9
SMNDC1O75940 SNHG8-203ENST00000602520 327 ntTSL 26.88□□□□□ -1.312e-65■■■■■ 33.9
SMNDC1O75940 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC6.35□□□□□ -1.392e-65■■■■■ 33.9
SMNDC1O75940 SNORA24-201ENST00000384096 131 ntBASIC2.64□□□□□ -1.992e-65■■■■■ 33.9
SMNDC1O75940 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.42e-6■■■■■ 33.9
SMNDC1O75940 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.042e-6■■■■■ 33.9
SMNDC1O75940 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.142e-6■■■■■ 33.9
Retrieved 100 of 11,362 protein–RNA pairs in 203.1 ms