Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 GRIA2-201ENST00000264426 3445 ntAPPRIS ALT1 TSL 1 (best) BASIC7.59□□□□□ -1.19
HLA-CQ95604 DIAPH3-204ENST00000400320 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC7.59□□□□□ -1.19
HLA-CQ95604 ATXN2-202ENST00000389153 3854 ntAPPRIS ALT2 TSL 5 BASIC7.59□□□□□ -1.19
HLA-CQ95604 ZNF585B-203ENST00000527838 2732 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
HLA-CQ95604 LINC01695-203ENST00000453420 4486 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
HLA-CQ95604 AL359924.1-201ENST00000450451 3127 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
HLA-CQ95604 LRRC66-201ENST00000343457 3327 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
HLA-CQ95604 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC7.59□□□□□ -1.19
HLA-CQ95604 TTC33-201ENST00000337702 2612 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
HLA-CQ95604 MLLT3-203ENST00000380338 6772 ntAPPRIS P3 TSL 1 (best) BASIC7.59□□□□□ -1.19
HLA-CQ95604 ZNF407-207ENST00000582337 5662 ntTSL 5 BASIC7.59□□□□□ -1.19
HLA-CQ95604 LINC00703-202ENST00000454152 2390 ntTSL 2 BASIC7.59□□□□□ -1.19
HLA-CQ95604 ZNF396-201ENST00000306346 2788 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
HLA-CQ95604 RPL7A-202ENST00000323345 891 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
HLA-CQ95604 AC073343.1-201ENST00000328239 651 ntBASIC7.59□□□□□ -1.19
HLA-CQ95604 AP000812.1-201ENST00000378140 477 ntTSL 3 BASIC7.59□□□□□ -1.19
HLA-CQ95604 RPL34-202ENST00000394667 441 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
HLA-CQ95604 AC068050.1-201ENST00000394891 380 ntBASIC7.59□□□□□ -1.19
HLA-CQ95604 NPM1P38-201ENST00000403835 865 ntBASIC7.59□□□□□ -1.19
HLA-CQ95604 BTBD10P2-201ENST00000404779 676 ntBASIC7.59□□□□□ -1.19
HLA-CQ95604 AL590290.1-201ENST00000405336 380 ntBASIC7.59□□□□□ -1.19
HLA-CQ95604 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC7.59□□□□□ -1.19
HLA-CQ95604 AL034379.1-201ENST00000423216 253 ntBASIC7.59□□□□□ -1.19
HLA-CQ95604 LINC01506-201ENST00000432148 495 ntTSL 2 BASIC7.59□□□□□ -1.19
HLA-CQ95604 AL731544.1-201ENST00000436500 370 ntTSL 5 BASIC7.59□□□□□ -1.19
HLA-CQ95604 PPIAP20-201ENST00000449839 135 ntBASIC7.59□□□□□ -1.19
HLA-CQ95604 BX323845.2-201ENST00000458382 234 ntBASIC7.59□□□□□ -1.19
HLA-CQ95604 RNU7-152P-201ENST00000458982 64 ntBASIC7.59□□□□□ -1.19
HLA-CQ95604 AC068587.1-201ENST00000483613 781 ntBASIC7.59□□□□□ -1.19
HLA-CQ95604 RN7SL214P-201ENST00000487317 265 ntBASIC7.59□□□□□ -1.19
HLA-CQ95604 RPS27P20-201ENST00000492051 246 ntBASIC7.59□□□□□ -1.19
HLA-CQ95604 RPSAP51-201ENST00000497462 645 ntBASIC7.59□□□□□ -1.19
HLA-CQ95604 AC093878.1-201ENST00000515630 432 ntBASIC7.59□□□□□ -1.19
HLA-CQ95604 SCARNA6.1-201ENST00000516989 238 ntBASIC7.59□□□□□ -1.19
HLA-CQ95604 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC7.59□□□□□ -1.19
HLA-CQ95604 AC105150.1-201ENST00000518011 551 ntTSL 3 BASIC7.59□□□□□ -1.19
HLA-CQ95604 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC7.59□□□□□ -1.19
HLA-CQ95604 NARS2-204ENST00000528850 2137 ntTSL 5 BASIC7.59□□□□□ -1.19
HLA-CQ95604 COPZ1-205ENST00000548753 778 ntTSL 3 BASIC7.59□□□□□ -1.19
HLA-CQ95604 AC012464.1-201ENST00000550687 540 ntTSL 4 BASIC7.59□□□□□ -1.19
HLA-CQ95604 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC7.59□□□□□ -1.19
HLA-CQ95604 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC7.59□□□□□ -1.19
HLA-CQ95604 AL136084.2-214ENST00000587726 716 ntTSL 5 BASIC7.59□□□□□ -1.19
HLA-CQ95604 AL451085.1-201ENST00000604546 690 ntBASIC7.59□□□□□ -1.19
HLA-CQ95604 AC006924.1-201ENST00000610750 559 ntBASIC7.59□□□□□ -1.19
HLA-CQ95604 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
HLA-CQ95604 AC091925.1-201ENST00000623204 462 ntBASIC7.59□□□□□ -1.19
HLA-CQ95604 AC010149.2-201ENST00000637608 315 ntBASIC7.59□□□□□ -1.19
HLA-CQ95604 STK33-201ENST00000315204 2707 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
HLA-CQ95604 OR2G6-203ENST00000641804 6084 ntAPPRIS P1 BASIC7.59□□□□□ -1.19
HLA-CQ95604 CLEC1A-204ENST00000457018 1686 ntAPPRIS ALT2 TSL 2 BASIC7.59□□□□□ -1.19
HLA-CQ95604 LUARIS-201ENST00000436105 2916 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
HLA-CQ95604 UBR4-202ENST00000375224 3475 ntTSL 2 BASIC7.59□□□□□ -1.19
HLA-CQ95604 NPIPB11-201ENST00000524087 3653 ntAPPRIS P1 TSL 5 BASIC7.59□□□□□ -1.19
HLA-CQ95604 MSH6-209ENST00000538136 4055 ntTSL 2 BASIC7.59□□□□□ -1.19
HLA-CQ95604 AP002907.1-201ENST00000606361 1430 ntBASIC7.59□□□□□ -1.19
HLA-CQ95604 NLGN4X-204ENST00000381095 5870 ntAPPRIS P2 TSL 1 (best) BASIC7.59□□□□□ -1.19
HLA-CQ95604 OPTN-202ENST00000378747 3400 ntAPPRIS P2 TSL 1 (best) BASIC7.59□□□□□ -1.19
HLA-CQ95604 PLEKHA5-215ENST00000539256 3357 ntTSL 2 BASIC7.59□□□□□ -1.2
HLA-CQ95604 AC127502.2-201ENST00000602663 2351 ntBASIC7.59□□□□□ -1.2
HLA-CQ95604 TRIM2-201ENST00000338700 6735 ntTSL 1 (best) BASIC7.59□□□□□ -1.2
HLA-CQ95604 SMARCA1-203ENST00000371123 3948 ntAPPRIS ALT2 TSL 1 (best) BASIC7.59□□□□□ -1.2
HLA-CQ95604 ZRANB1-201ENST00000359653 5695 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
HLA-CQ95604 FMOD-201ENST00000354955 3310 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
HLA-CQ95604 AFP-201ENST00000226359 1914 ntTSL 5 BASIC7.58□□□□□ -1.2
HLA-CQ95604 PRKCQ-204ENST00000610727 3077 ntTSL 5 BASIC7.58□□□□□ -1.2
HLA-CQ95604 GPI-202ENST00000415930 4000 ntTSL 2 BASIC7.58□□□□□ -1.2
HLA-CQ95604 LINC01362-202ENST00000452901 1712 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
HLA-CQ95604 HTT-201ENST00000355072 13474 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
HLA-CQ95604 AP003486.1-201ENST00000525716 3994 ntBASIC7.58□□□□□ -1.2
HLA-CQ95604 AL121950.1-201ENST00000624993 2077 ntBASIC7.58□□□□□ -1.2
HLA-CQ95604 CTNND1-234ENST00000532844 6012 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
HLA-CQ95604 DTNA-205ENST00000399113 2232 ntAPPRIS ALT2 TSL 5 BASIC7.58□□□□□ -1.2
HLA-CQ95604 EPS8-207ENST00000540613 2204 ntTSL 2 BASIC7.58□□□□□ -1.2
HLA-CQ95604 CDKAL1-202ENST00000378610 3115 ntAPPRIS P1 TSL 2 BASIC7.58□□□□□ -1.2
HLA-CQ95604 SLC16A4-203ENST00000437429 2372 ntTSL 2 BASIC7.58□□□□□ -1.2
HLA-CQ95604 BPIFA2-201ENST00000253362 1122 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
HLA-CQ95604 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC7.58□□□□□ -1.2
HLA-CQ95604 BPIFA2-202ENST00000354932 1047 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
HLA-CQ95604 Y_RNA.100-201ENST00000363141 102 ntBASIC7.58□□□□□ -1.2
HLA-CQ95604 Y_RNA.381-201ENST00000365666 102 ntBASIC7.58□□□□□ -1.2
HLA-CQ95604 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC7.58□□□□□ -1.2
HLA-CQ95604 RNU1-149P-201ENST00000390870 161 ntBASIC7.58□□□□□ -1.2
HLA-CQ95604 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
HLA-CQ95604 ATP5J-206ENST00000400099 492 ntTSL 5 BASIC7.58□□□□□ -1.2
HLA-CQ95604 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC7.58□□□□□ -1.2
HLA-CQ95604 RNU6-1148P-201ENST00000410992 104 ntBASIC7.58□□□□□ -1.2
HLA-CQ95604 RNU6-847P-201ENST00000411115 108 ntBASIC7.58□□□□□ -1.2
HLA-CQ95604 AL139042.1-201ENST00000429137 305 ntTSL 3 BASIC7.58□□□□□ -1.2
HLA-CQ95604 AL158832.1-201ENST00000429661 406 ntTSL 3 BASIC7.58□□□□□ -1.2
HLA-CQ95604 AC005083.1-202ENST00000430859 740 ntTSL 2 BASIC7.58□□□□□ -1.2
HLA-CQ95604 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC7.58□□□□□ -1.2
HLA-CQ95604 BNIP3P2-201ENST00000441221 577 ntBASIC7.58□□□□□ -1.2
HLA-CQ95604 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
HLA-CQ95604 LAPTM4BP1-201ENST00000447781 690 ntBASIC7.58□□□□□ -1.2
HLA-CQ95604 MTND6P5-201ENST00000448266 512 ntBASIC7.58□□□□□ -1.2
HLA-CQ95604 ATP5J2-205ENST00000449683 460 ntTSL 3 BASIC7.58□□□□□ -1.2
HLA-CQ95604 AC105417.1-201ENST00000514691 285 ntBASIC7.58□□□□□ -1.2
HLA-CQ95604 SCARNA20.1-201ENST00000516009 138 ntBASIC7.58□□□□□ -1.2
HLA-CQ95604 Y_RNA.718-201ENST00000517110 102 ntBASIC7.58□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 82 ms