Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL4A4P53420 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC5.14□□□□□ -1.59
COL4A4P53420 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC5.14□□□□□ -1.59
COL4A4P53420 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC5.14□□□□□ -1.59
COL4A4P53420 ABHD15-AS1-201ENST00000581474 187 ntTSL 5 BASIC5.14□□□□□ -1.59
COL4A4P53420 BNIP3P11-201ENST00000603878 563 ntBASIC5.14□□□□□ -1.59
COL4A4P53420 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC5.14□□□□□ -1.59
COL4A4P53420 AC010424.2-201ENST00000607594 443 ntBASIC5.14□□□□□ -1.59
COL4A4P53420 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
COL4A4P53420 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
COL4A4P53420 KIF1B-204ENST00000377086 10669 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
COL4A4P53420 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
COL4A4P53420 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC5.14□□□□□ -1.59
COL4A4P53420 AL117339.4-201ENST00000608335 7063 ntBASIC5.14□□□□□ -1.59
COL4A4P53420 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
COL4A4P53420 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC5.14□□□□□ -1.59
COL4A4P53420 ACTR3BP2-202ENST00000623630 1338 ntBASIC5.13□□□□□ -1.59
COL4A4P53420 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
COL4A4P53420 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
COL4A4P53420 CLSTN2-201ENST00000458420 14202 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
COL4A4P53420 RABGAP1L-218ENST00000489615 6821 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
COL4A4P53420 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC5.13□□□□□ -1.59
COL4A4P53420 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC5.13□□□□□ -1.59
COL4A4P53420 CARF-208ENST00000428585 2513 ntTSL 2 BASIC5.13□□□□□ -1.59
COL4A4P53420 RNU1-85P-201ENST00000364127 164 ntBASIC5.13□□□□□ -1.59
COL4A4P53420 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
COL4A4P53420 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
COL4A4P53420 ARL4AP5-201ENST00000404372 599 ntBASIC5.13□□□□□ -1.59
COL4A4P53420 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
COL4A4P53420 QRSL1P2-201ENST00000418582 964 ntBASIC5.13□□□□□ -1.59
COL4A4P53420 RPL7P19-201ENST00000469948 618 ntBASIC5.13□□□□□ -1.59
COL4A4P53420 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC5.13□□□□□ -1.59
COL4A4P53420 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC5.13□□□□□ -1.59
COL4A4P53420 CASC19-203ENST00000523510 575 ntTSL 3 BASIC5.13□□□□□ -1.59
COL4A4P53420 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
COL4A4P53420 AL049830.4-201ENST00000555149 351 ntBASIC5.13□□□□□ -1.59
COL4A4P53420 AC007224.1-201ENST00000564410 144 ntBASIC5.13□□□□□ -1.59
COL4A4P53420 MIR4298-201ENST00000584380 73 ntBASIC5.13□□□□□ -1.59
COL4A4P53420 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC5.13□□□□□ -1.59
COL4A4P53420 AC100847.1-201ENST00000611316 481 ntBASIC5.13□□□□□ -1.59
COL4A4P53420 SNX18P1Y-201ENST00000616231 511 ntBASIC5.13□□□□□ -1.59
COL4A4P53420 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
COL4A4P53420 POLQ-204ENST00000621776 9055 ntTSL 5 BASIC5.13□□□□□ -1.59
COL4A4P53420 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC5.13□□□□□ -1.59
COL4A4P53420 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
COL4A4P53420 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
COL4A4P53420 POMP-202ENST00000460403 1428 ntTSL 3 BASIC5.13□□□□□ -1.59
COL4A4P53420 CEP250-202ENST00000397527 15703 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
COL4A4P53420 MEF2C-202ENST00000424173 6336 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
COL4A4P53420 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
COL4A4P53420 RTL9-203ENST00000540313 5225 ntAPPRIS P2 TSL 2 BASIC5.13□□□□□ -1.59
COL4A4P53420 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC5.13□□□□□ -1.59
COL4A4P53420 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
COL4A4P53420 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC5.12□□□□□ -1.59
COL4A4P53420 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC5.12□□□□□ -1.59
COL4A4P53420 DNAJC16-202ENST00000375847 6069 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL4A4P53420 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL4A4P53420 DNAJC6-203ENST00000395325 5743 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
COL4A4P53420 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC5.12□□□□□ -1.59
COL4A4P53420 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC5.12□□□□□ -1.59
COL4A4P53420 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC5.12□□□□□ -1.59
COL4A4P53420 AC012409.3-201ENST00000611343 981 ntBASIC5.12□□□□□ -1.59
COL4A4P53420 AP000648.2-201ENST00000624182 404 ntBASIC5.12□□□□□ -1.59
COL4A4P53420 AC008785.1-201ENST00000624475 456 ntBASIC5.12□□□□□ -1.59
COL4A4P53420 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC5.12□□□□□ -1.59
COL4A4P53420 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL4A4P53420 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC5.12□□□□□ -1.59
COL4A4P53420 MEF2C-201ENST00000340208 6192 ntAPPRIS ALT1 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL4A4P53420 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
COL4A4P53420 PCDH15-213ENST00000395445 5917 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
COL4A4P53420 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL4A4P53420 SAMMSON-210ENST00000641260 1308 ntBASIC5.12□□□□□ -1.59
COL4A4P53420 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL4A4P53420 CLCN3-211ENST00000613795 5874 ntTSL 5 BASIC5.12□□□□□ -1.59
COL4A4P53420 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC5.12□□□□□ -1.59
COL4A4P53420 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
COL4A4P53420 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC5.12□□□□□ -1.59
COL4A4P53420 BRCA1-221ENST00000493795 5732 ntTSL 5 BASIC5.12□□□□□ -1.59
COL4A4P53420 CASC19-255ENST00000641733 1385 ntBASIC5.12□□□□□ -1.59
COL4A4P53420 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL4A4P53420 KCNMA1-203ENST00000354353 5732 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
COL4A4P53420 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
COL4A4P53420 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC5.12□□□□□ -1.59
COL4A4P53420 SNORA71.2-201ENST00000364941 134 ntBASIC5.12□□□□□ -1.59
COL4A4P53420 RNU1-64P-201ENST00000365443 163 ntBASIC5.12□□□□□ -1.59
COL4A4P53420 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
COL4A4P53420 AC025750.1-201ENST00000399891 379 ntBASIC5.12□□□□□ -1.59
COL4A4P53420 GAPDHP49-201ENST00000421421 961 ntBASIC5.12□□□□□ -1.59
COL4A4P53420 AL451062.2-201ENST00000427515 271 ntBASIC5.12□□□□□ -1.59
COL4A4P53420 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC5.12□□□□□ -1.59
COL4A4P53420 AC020890.1-201ENST00000491837 504 ntBASIC5.12□□□□□ -1.59
COL4A4P53420 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL4A4P53420 AC009803.1-202ENST00000551940 544 ntTSL 4 BASIC5.12□□□□□ -1.59
COL4A4P53420 AC127024.5-201ENST00000580085 462 ntBASIC5.12□□□□□ -1.59
COL4A4P53420 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC5.12□□□□□ -1.59
COL4A4P53420 AC067931.1-201ENST00000624190 671 ntBASIC5.12□□□□□ -1.59
COL4A4P53420 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC5.11□□□□□ -1.59
COL4A4P53420 AC008040.1-202ENST00000483289 6251 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
COL4A4P53420 SLC4A8-202ENST00000358657 11731 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL4A4P53420 DOCK9-208ENST00000448493 7887 ntAPPRIS ALT2 TSL 5 BASIC5.11□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 111.3 ms