Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC004817.4-201ENST00000602396 3625 ntBASIC6.22□□□□□ -1.41
SHANK3Q9BYB0 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC6.22□□□□□ -1.41
SHANK3Q9BYB0 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC6.22□□□□□ -1.41
SHANK3Q9BYB0 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
SHANK3Q9BYB0 KIAA1549L-202ENST00000321505 11678 ntAPPRIS P2 TSL 1 (best) BASIC6.22□□□□□ -1.41
SHANK3Q9BYB0 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC6.22□□□□□ -1.41
SHANK3Q9BYB0 RN7SKP267-201ENST00000410381 285 ntBASIC6.22□□□□□ -1.41
SHANK3Q9BYB0 AL358176.3-201ENST00000420757 454 ntBASIC6.22□□□□□ -1.41
SHANK3Q9BYB0 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC6.22□□□□□ -1.41
SHANK3Q9BYB0 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC6.22□□□□□ -1.41
SHANK3Q9BYB0 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC6.22□□□□□ -1.41
SHANK3Q9BYB0 AC008056.2-201ENST00000553812 551 ntTSL 5 BASIC6.22□□□□□ -1.41
SHANK3Q9BYB0 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC6.22□□□□□ -1.41
SHANK3Q9BYB0 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC6.22□□□□□ -1.41
SHANK3Q9BYB0 AC093249.4-201ENST00000564755 259 ntBASIC6.22□□□□□ -1.41
SHANK3Q9BYB0 AC018695.5-201ENST00000605872 315 ntBASIC6.22□□□□□ -1.41
SHANK3Q9BYB0 U3.53-201ENST00000628922 216 ntBASIC6.22□□□□□ -1.41
SHANK3Q9BYB0 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC6.21□□□□□ -1.41
SHANK3Q9BYB0 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC6.21□□□□□ -1.41
SHANK3Q9BYB0 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC6.21□□□□□ -1.41
SHANK3Q9BYB0 CHRM5-201ENST00000383263 5410 ntAPPRIS P1 TSL 2 BASIC6.21□□□□□ -1.41
SHANK3Q9BYB0 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC6.21□□□□□ -1.41
SHANK3Q9BYB0 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC6.21□□□□□ -1.41
SHANK3Q9BYB0 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC6.21□□□□□ -1.42
SHANK3Q9BYB0 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC6.21□□□□□ -1.42
SHANK3Q9BYB0 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC6.21□□□□□ -1.42
SHANK3Q9BYB0 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC6.21□□□□□ -1.42
SHANK3Q9BYB0 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
SHANK3Q9BYB0 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC6.21□□□□□ -1.42
SHANK3Q9BYB0 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC6.21□□□□□ -1.42
SHANK3Q9BYB0 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC6.21□□□□□ -1.42
SHANK3Q9BYB0 MTND4LP2-201ENST00000502312 285 ntBASIC6.21□□□□□ -1.42
SHANK3Q9BYB0 RNU1-45P-201ENST00000517191 141 ntBASIC6.21□□□□□ -1.42
SHANK3Q9BYB0 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC6.21□□□□□ -1.42
SHANK3Q9BYB0 AL591034.3-201ENST00000605511 685 ntBASIC6.21□□□□□ -1.42
SHANK3Q9BYB0 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC6.21□□□□□ -1.42
SHANK3Q9BYB0 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
SHANK3Q9BYB0 AL731566.1-201ENST00000620490 1937 ntBASIC6.21□□□□□ -1.42
SHANK3Q9BYB0 PTER-201ENST00000298942 3448 ntTSL 5 BASIC6.21□□□□□ -1.42
SHANK3Q9BYB0 BDNF-212ENST00000525528 4766 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
SHANK3Q9BYB0 ZNF148-201ENST00000360647 9651 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
SHANK3Q9BYB0 ZCCHC6-206ENST00000375963 5379 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.42
SHANK3Q9BYB0 AL450345.1-202ENST00000605741 3881 ntBASIC6.21□□□□□ -1.42
SHANK3Q9BYB0 GIGYF2-246ENST00000629305 7878 ntTSL 5 BASIC6.21□□□□□ -1.42
SHANK3Q9BYB0 INTS6-202ENST00000398119 7041 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
SHANK3Q9BYB0 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
SHANK3Q9BYB0 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
SHANK3Q9BYB0 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
SHANK3Q9BYB0 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
SHANK3Q9BYB0 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
SHANK3Q9BYB0 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
SHANK3Q9BYB0 SALL4P2-201ENST00000423288 2910 ntBASIC6.2□□□□□ -1.42
SHANK3Q9BYB0 PDGFRA-201ENST00000257290 6576 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
SHANK3Q9BYB0 SNORA71.3-201ENST00000362582 128 ntBASIC6.2□□□□□ -1.42
SHANK3Q9BYB0 AC114755.5-201ENST00000447760 831 ntBASIC6.2□□□□□ -1.42
SHANK3Q9BYB0 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC6.2□□□□□ -1.42
SHANK3Q9BYB0 CYCSP34-201ENST00000458172 304 ntBASIC6.2□□□□□ -1.42
SHANK3Q9BYB0 RPL23AP24-201ENST00000458203 385 ntBASIC6.2□□□□□ -1.42
SHANK3Q9BYB0 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC6.2□□□□□ -1.42
SHANK3Q9BYB0 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC6.2□□□□□ -1.42
SHANK3Q9BYB0 IGKV1OR2-118-201ENST00000603238 347 ntBASIC6.2□□□□□ -1.42
SHANK3Q9BYB0 AL049794.2-201ENST00000616301 365 ntBASIC6.2□□□□□ -1.42
SHANK3Q9BYB0 AC002044.3-201ENST00000623314 541 ntBASIC6.2□□□□□ -1.42
SHANK3Q9BYB0 CPS1-203ENST00000430249 5698 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
SHANK3Q9BYB0 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC6.2□□□□□ -1.42
SHANK3Q9BYB0 MDM4-204ENST00000367183 9098 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
SHANK3Q9BYB0 OR52I2-203ENST00000641896 6591 ntAPPRIS ALT2 BASIC6.2□□□□□ -1.42
SHANK3Q9BYB0 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC6.2□□□□□ -1.42
SHANK3Q9BYB0 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC6.2□□□□□ -1.42
SHANK3Q9BYB0 THADA-207ENST00000405975 6114 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
SHANK3Q9BYB0 BRCA1-221ENST00000493795 5732 ntTSL 5 BASIC6.2□□□□□ -1.42
SHANK3Q9BYB0 SAMMSON-210ENST00000641260 1308 ntBASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 LMO7-202ENST00000341547 7237 ntAPPRIS P3 TSL 1 (best) BASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 OR7A10-201ENST00000248058 930 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 AL136979.1-201ENST00000421645 1120 ntTSL 3 BASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 MTND2P28-201ENST00000457540 1044 ntBASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 RPL7P19-201ENST00000469948 618 ntBASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 AF131215.7-201ENST00000602443 707 ntBASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 CTNND1-231ENST00000532463 5749 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 KIAA1210-201ENST00000402510 7824 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 OR14L1P-202ENST00000641545 3009 ntBASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 NUDT6-202ENST00000339154 1065 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 SNORA70C-201ENST00000384538 135 ntBASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 AL590762.2-201ENST00000395798 571 ntBASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 RPS17P8-201ENST00000434525 335 ntBASIC6.19□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 106.9 ms