Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
PRKDCP78527 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
PRKDCP78527 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
PRKDCP78527 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
PRKDCP78527 KIAA1143-201ENST00000296121 5122 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
PRKDCP78527 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC3.33□□□□□ -1.88
PRKDCP78527 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC3.33□□□□□ -1.88
PRKDCP78527 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
PRKDCP78527 ZCCHC6-204ENST00000375957 2262 ntTSL 2 BASIC3.33□□□□□ -1.88
PRKDCP78527 SMG1P6-201ENST00000532337 2930 ntBASIC3.33□□□□□ -1.88
PRKDCP78527 AC006042.3-201ENST00000454684 1469 ntBASIC3.33□□□□□ -1.88
PRKDCP78527 ICE2P1-201ENST00000512800 1849 ntBASIC3.33□□□□□ -1.88
PRKDCP78527 HMGB1-203ENST00000341423 5485 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
PRKDCP78527 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC3.33□□□□□ -1.88
PRKDCP78527 AC073346.2-201ENST00000624724 2058 ntBASIC3.33□□□□□ -1.88
PRKDCP78527 AC060780.1-202ENST00000590740 5084 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
PRKDCP78527 AC108467.2-201ENST00000617640 1597 ntBASIC3.33□□□□□ -1.88
PRKDCP78527 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC3.33□□□□□ -1.88
PRKDCP78527 TNS1-201ENST00000171887 10331 ntAPPRIS P3 TSL 1 (best) BASIC3.33□□□□□ -1.88
PRKDCP78527 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
PRKDCP78527 ADGRF5-202ENST00000283296 5810 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
PRKDCP78527 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC3.33□□□□□ -1.88
PRKDCP78527 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC3.33□□□□□ -1.88
PRKDCP78527 MAP9-201ENST00000311277 7333 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
PRKDCP78527 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
PRKDCP78527 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
PRKDCP78527 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
PRKDCP78527 NOX4-211ENST00000528341 1899 ntTSL 2 BASIC3.33□□□□□ -1.88
PRKDCP78527 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
PRKDCP78527 AL929601.4-201ENST00000613011 1341 ntBASIC3.33□□□□□ -1.88
PRKDCP78527 CTNND1-205ENST00000399050 6313 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
PRKDCP78527 ANAPC1P1-201ENST00000426186 2145 ntBASIC3.33□□□□□ -1.88
PRKDCP78527 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC3.33□□□□□ -1.88
PRKDCP78527 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
PRKDCP78527 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC3.33□□□□□ -1.88
PRKDCP78527 DCAF5-205ENST00000554215 4803 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
PRKDCP78527 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
PRKDCP78527 AC009643.2-201ENST00000603543 1448 ntBASIC3.33□□□□□ -1.88
PRKDCP78527 SLC5A12-201ENST00000280467 2269 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
PRKDCP78527 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC3.33□□□□□ -1.88
PRKDCP78527 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
PRKDCP78527 RN7SKP284-201ENST00000411002 343 ntBASIC3.33□□□□□ -1.88
PRKDCP78527 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC3.33□□□□□ -1.88
PRKDCP78527 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC3.33□□□□□ -1.88
PRKDCP78527 MRPL50P1-201ENST00000431951 384 ntBASIC3.33□□□□□ -1.88
PRKDCP78527 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
PRKDCP78527 BTF3P10-201ENST00000433415 495 ntBASIC3.33□□□□□ -1.88
PRKDCP78527 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC3.33□□□□□ -1.88
PRKDCP78527 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC3.33□□□□□ -1.88
PRKDCP78527 IMPA1P1-201ENST00000510718 842 ntBASIC3.33□□□□□ -1.88
PRKDCP78527 AC097486.1-201ENST00000515331 210 ntBASIC3.33□□□□□ -1.88
PRKDCP78527 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
PRKDCP78527 CCDC73-203ENST00000531481 4381 ntAPPRIS ALT2 TSL 2 BASIC3.33□□□□□ -1.88
PRKDCP78527 LINC02177-201ENST00000564305 5298 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
PRKDCP78527 HNRNPR-210ENST00000478691 7646 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
PRKDCP78527 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
PRKDCP78527 STARD4-AS1-201ENST00000500779 5525 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
PRKDCP78527 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
PRKDCP78527 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
PRKDCP78527 OR1F12-201ENST00000402365 945 ntBASIC3.33□□□□□ -1.88
PRKDCP78527 AC009238.2-201ENST00000431026 355 ntBASIC3.33□□□□□ -1.88
PRKDCP78527 AC127526.3-201ENST00000534291 450 ntTSL 3 BASIC3.33□□□□□ -1.88
PRKDCP78527 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC3.33□□□□□ -1.88
PRKDCP78527 SRGNP1-201ENST00000603392 451 ntBASIC3.33□□□□□ -1.88
PRKDCP78527 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
PRKDCP78527 LMO7-203ENST00000357063 8237 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
PRKDCP78527 CD109-203ENST00000437994 9401 ntAPPRIS ALT1 TSL 1 (best) BASIC3.32□□□□□ -1.88
PRKDCP78527 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
PRKDCP78527 PRDM2-203ENST00000343137 5797 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
PRKDCP78527 PHIP-201ENST00000275034 10460 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
PRKDCP78527 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
PRKDCP78527 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
PRKDCP78527 OR8H3-201ENST00000313472 939 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
PRKDCP78527 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
PRKDCP78527 AL139095.1-201ENST00000404326 391 ntBASIC3.32□□□□□ -1.88
PRKDCP78527 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC3.32□□□□□ -1.88
PRKDCP78527 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC3.32□□□□□ -1.88
PRKDCP78527 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC3.32□□□□□ -1.88
PRKDCP78527 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC3.32□□□□□ -1.88
PRKDCP78527 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC3.32□□□□□ -1.88
PRKDCP78527 AC084824.2-201ENST00000548906 345 ntBASIC3.32□□□□□ -1.88
PRKDCP78527 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC3.32□□□□□ -1.88
PRKDCP78527 AC107982.3-201ENST00000584957 985 ntBASIC3.32□□□□□ -1.88
PRKDCP78527 IPO5P1-202ENST00000600039 287 ntBASIC3.32□□□□□ -1.88
PRKDCP78527 AC096553.1-201ENST00000605169 829 ntBASIC3.32□□□□□ -1.88
PRKDCP78527 AL352984.2-202ENST00000613699 155 ntBASIC3.32□□□□□ -1.88
PRKDCP78527 RUNX1T1-250ENST00000614812 7483 ntAPPRIS P3 TSL 5 BASIC3.32□□□□□ -1.88
PRKDCP78527 ZFRP1-201ENST00000457579 2970 ntBASIC3.32□□□□□ -1.88
PRKDCP78527 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC3.32□□□□□ -1.88
PRKDCP78527 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC3.32□□□□□ -1.88
PRKDCP78527 NFASC-204ENST00000401399 10205 ntAPPRIS ALT1 TSL 1 (best) BASIC3.32□□□□□ -1.88
PRKDCP78527 HP1BP3-203ENST00000375003 4822 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
PRKDCP78527 RPGRIP1L-205ENST00000563746 4193 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
PRKDCP78527 TMEM170B-201ENST00000379426 8362 ntAPPRIS P1 TSL 4 BASIC3.32□□□□□ -1.88
PRKDCP78527 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC3.32□□□□□ -1.88
PRKDCP78527 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
PRKDCP78527 KCNMA1-248ENST00000638991 11990 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
PRKDCP78527 FBXO40-201ENST00000338040 5929 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
PRKDCP78527 MIR1289-1-201ENST00000408836 144 ntBASIC3.32□□□□□ -1.88
PRKDCP78527 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 73 ms