Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC6.27□□□□□ -1.41
COL18A1P39060 AC104763.1-201ENST00000475274 360 ntBASIC6.27□□□□□ -1.41
COL18A1P39060 GLRXP2-201ENST00000555594 321 ntBASIC6.27□□□□□ -1.41
COL18A1P39060 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC6.27□□□□□ -1.41
COL18A1P39060 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL18A1P39060 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
COL18A1P39060 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL18A1P39060 MFSD8-220ENST00000641243 1422 ntBASIC6.27□□□□□ -1.41
COL18A1P39060 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC6.26□□□□□ -1.41
COL18A1P39060 AC017079.1-201ENST00000333650 415 ntBASIC6.26□□□□□ -1.41
COL18A1P39060 AL389915.1-201ENST00000422463 466 ntBASIC6.26□□□□□ -1.41
COL18A1P39060 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
COL18A1P39060 AL359073.1-201ENST00000448036 403 ntBASIC6.26□□□□□ -1.41
COL18A1P39060 CYCSP34-201ENST00000458172 304 ntBASIC6.26□□□□□ -1.41
COL18A1P39060 MRPL49P2-201ENST00000521066 465 ntBASIC6.26□□□□□ -1.41
COL18A1P39060 PYM1-205ENST00000547925 499 ntTSL 3 BASIC6.26□□□□□ -1.41
COL18A1P39060 AC084783.1-201ENST00000565846 910 ntBASIC6.26□□□□□ -1.41
COL18A1P39060 MIR4420-201ENST00000583944 77 ntBASIC6.26□□□□□ -1.41
COL18A1P39060 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC6.26□□□□□ -1.41
COL18A1P39060 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL18A1P39060 ZNF19-206ENST00000565100 2087 ntTSL 5 BASIC6.26□□□□□ -1.41
COL18A1P39060 ANK2-212ENST00000506722 8051 ntAPPRIS ALT2 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL18A1P39060 TRPS1-203ENST00000395715 9990 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL18A1P39060 BRIP1-201ENST00000259008 6048 ntAPPRIS P2 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL18A1P39060 ZNF137P-201ENST00000456718 1920 ntBASIC6.26□□□□□ -1.41
COL18A1P39060 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL18A1P39060 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
COL18A1P39060 MEF2C-201ENST00000340208 6192 ntAPPRIS ALT1 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL18A1P39060 OR1F12-201ENST00000402365 945 ntBASIC6.26□□□□□ -1.41
COL18A1P39060 RPL7P19-201ENST00000469948 618 ntBASIC6.26□□□□□ -1.41
COL18A1P39060 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
COL18A1P39060 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC6.26□□□□□ -1.41
COL18A1P39060 AC007224.1-201ENST00000564410 144 ntBASIC6.26□□□□□ -1.41
COL18A1P39060 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC6.26□□□□□ -1.41
COL18A1P39060 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC6.26□□□□□ -1.41
COL18A1P39060 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
COL18A1P39060 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
COL18A1P39060 SSPO-201ENST00000378016 15589 ntAPPRIS P1 TSL 5 BASIC6.25□□□□□ -1.41
COL18A1P39060 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC6.25□□□□□ -1.41
COL18A1P39060 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC6.25□□□□□ -1.41
COL18A1P39060 ERLIN2-211ENST00000523887 2347 ntTSL 2 BASIC6.25□□□□□ -1.41
COL18A1P39060 SPTA1-201ENST00000368147 7999 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL18A1P39060 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
COL18A1P39060 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
COL18A1P39060 ZNF106-201ENST00000263805 10460 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL18A1P39060 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL18A1P39060 AC021146.4-201ENST00000309229 279 ntBASIC6.25□□□□□ -1.41
COL18A1P39060 RNU1-130P-201ENST00000363930 160 ntBASIC6.25□□□□□ -1.41
COL18A1P39060 SNORA71.2-201ENST00000364941 134 ntBASIC6.25□□□□□ -1.41
COL18A1P39060 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC6.25□□□□□ -1.41
COL18A1P39060 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC6.25□□□□□ -1.41
COL18A1P39060 MTUS2-AS2-202ENST00000434779 720 ntTSL 3 BASIC6.25□□□□□ -1.41
COL18A1P39060 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC6.25□□□□□ -1.41
COL18A1P39060 AC091167.1-201ENST00000492017 396 ntBASIC6.25□□□□□ -1.41
COL18A1P39060 AC109439.2-201ENST00000502421 564 ntTSL 4 BASIC6.25□□□□□ -1.41
COL18A1P39060 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC6.25□□□□□ -1.41
COL18A1P39060 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC6.25□□□□□ -1.41
COL18A1P39060 BNIP3P33-201ENST00000598912 569 ntBASIC6.25□□□□□ -1.41
COL18A1P39060 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
COL18A1P39060 COLCA1-205ENST00000620864 8098 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
COL18A1P39060 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
COL18A1P39060 CNKSR3-205ENST00000607772 21063 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL18A1P39060 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC6.25□□□□□ -1.41
COL18A1P39060 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL18A1P39060 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC6.25□□□□□ -1.41
COL18A1P39060 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC6.25□□□□□ -1.41
COL18A1P39060 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC6.25□□□□□ -1.41
COL18A1P39060 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
COL18A1P39060 CTNND1-236ENST00000533667 4990 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
COL18A1P39060 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
COL18A1P39060 NRK-204ENST00000540278 1687 ntTSL 2 BASIC6.24□□□□□ -1.41
COL18A1P39060 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
COL18A1P39060 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC6.24□□□□□ -1.41
COL18A1P39060 IGLVIV-65-201ENST00000517313 360 ntBASIC6.24□□□□□ -1.41
COL18A1P39060 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC6.24□□□□□ -1.41
COL18A1P39060 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC6.24□□□□□ -1.41
COL18A1P39060 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC6.24□□□□□ -1.41
COL18A1P39060 SNORA74C-1-201ENST00000580726 201 ntBASIC6.24□□□□□ -1.41
COL18A1P39060 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC6.24□□□□□ -1.41
COL18A1P39060 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC6.24□□□□□ -1.41
COL18A1P39060 AL445567.2-201ENST00000618935 498 ntBASIC6.24□□□□□ -1.41
COL18A1P39060 AL035461.2-201ENST00000619201 524 ntBASIC6.24□□□□□ -1.41
COL18A1P39060 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC6.24□□□□□ -1.41
COL18A1P39060 PTER-201ENST00000298942 3448 ntTSL 5 BASIC6.24□□□□□ -1.41
COL18A1P39060 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC6.24□□□□□ -1.41
COL18A1P39060 VN2R3P-201ENST00000422626 1412 ntBASIC6.24□□□□□ -1.41
COL18A1P39060 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC6.24□□□□□ -1.41
COL18A1P39060 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC6.24□□□□□ -1.41
COL18A1P39060 TPD52-203ENST00000448733 4339 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
COL18A1P39060 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC6.24□□□□□ -1.41
COL18A1P39060 AL592182.3-201ENST00000642132 3304 ntBASIC6.24□□□□□ -1.41
COL18A1P39060 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC6.24□□□□□ -1.41
COL18A1P39060 USP29-201ENST00000254181 3705 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
COL18A1P39060 MIR23B-201ENST00000384832 97 ntBASIC6.23□□□□□ -1.41
COL18A1P39060 RPL32P23-201ENST00000397237 405 ntBASIC6.23□□□□□ -1.41
COL18A1P39060 RNU6ATAC34P-201ENST00000408879 121 ntBASIC6.23□□□□□ -1.41
COL18A1P39060 TMSB10P2-201ENST00000416049 131 ntBASIC6.23□□□□□ -1.41
COL18A1P39060 AL136979.1-201ENST00000421645 1120 ntTSL 3 BASIC6.23□□□□□ -1.41
COL18A1P39060 AC044797.1-201ENST00000445744 679 ntBASIC6.23□□□□□ -1.41
COL18A1P39060 SCARNA10-201ENST00000459255 330 ntBASIC6.23□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 75.1 ms