Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 Z99127.2-201ENST00000441426 334 ntBASIC6.53□□□□□ -1.36
COL6A1P12109 AL022237.1-201ENST00000446663 358 ntBASIC6.53□□□□□ -1.36
COL6A1P12109 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC6.53□□□□□ -1.36
COL6A1P12109 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC6.53□□□□□ -1.36
COL6A1P12109 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC6.53□□□□□ -1.36
COL6A1P12109 USP9YP10-201ENST00000454868 628 ntBASIC6.53□□□□□ -1.36
COL6A1P12109 HNRNPDLP3-201ENST00000456745 380 ntBASIC6.53□□□□□ -1.36
COL6A1P12109 HSPE1P22-201ENST00000456856 327 ntBASIC6.53□□□□□ -1.36
COL6A1P12109 AC073594.1-201ENST00000462065 364 ntBASIC6.53□□□□□ -1.36
COL6A1P12109 AC021205.1-201ENST00000468797 348 ntBASIC6.53□□□□□ -1.36
COL6A1P12109 CYCSP20-201ENST00000473154 315 ntBASIC6.53□□□□□ -1.36
COL6A1P12109 AC128716.1-201ENST00000475129 166 ntBASIC6.53□□□□□ -1.36
COL6A1P12109 RN7SL222P-201ENST00000476452 299 ntBASIC6.53□□□□□ -1.36
COL6A1P12109 RPL7AP6-201ENST00000477943 801 ntBASIC6.53□□□□□ -1.36
COL6A1P12109 RPL7P39-201ENST00000481157 744 ntBASIC6.53□□□□□ -1.36
COL6A1P12109 AC126121.1-201ENST00000482313 553 ntBASIC6.53□□□□□ -1.36
COL6A1P12109 AC099521.1-201ENST00000482557 334 ntBASIC6.53□□□□□ -1.36
COL6A1P12109 AC072052.1-201ENST00000496556 306 ntBASIC6.53□□□□□ -1.36
COL6A1P12109 AC010374.1-201ENST00000503762 1237 ntBASIC6.53□□□□□ -1.36
COL6A1P12109 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC6.53□□□□□ -1.36
COL6A1P12109 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC6.53□□□□□ -1.36
COL6A1P12109 AC093770.1-201ENST00000511559 571 ntBASIC6.53□□□□□ -1.36
COL6A1P12109 USP9YP5-201ENST00000511770 630 ntBASIC6.53□□□□□ -1.36
COL6A1P12109 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC6.53□□□□□ -1.36
COL6A1P12109 AC087373.1-201ENST00000524920 491 ntBASIC6.53□□□□□ -1.36
COL6A1P12109 AC004923.2-201ENST00000529649 369 ntBASIC6.53□□□□□ -1.36
COL6A1P12109 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC6.53□□□□□ -1.36
COL6A1P12109 LINC02441-201ENST00000543651 552 ntTSL 4 BASIC6.53□□□□□ -1.36
COL6A1P12109 DCN-210ENST00000547568 823 ntTSL 3 BASIC6.53□□□□□ -1.36
COL6A1P12109 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC6.53□□□□□ -1.36
COL6A1P12109 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC6.53□□□□□ -1.36
COL6A1P12109 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC6.53□□□□□ -1.36
COL6A1P12109 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC6.53□□□□□ -1.36
COL6A1P12109 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC6.53□□□□□ -1.36
COL6A1P12109 LINC01050-201ENST00000604485 760 ntTSL 3 BASIC6.53□□□□□ -1.36
COL6A1P12109 AC018638.7-201ENST00000605836 1114 ntBASIC6.53□□□□□ -1.36
COL6A1P12109 AL049539.1-201ENST00000611964 459 ntBASIC6.53□□□□□ -1.36
COL6A1P12109 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC6.53□□□□□ -1.36
COL6A1P12109 AC003992.1-201ENST00000635364 557 ntBASIC6.53□□□□□ -1.36
COL6A1P12109 KLF18-201ENST00000634670 3159 ntAPPRIS P1 TSL 5 BASIC6.53□□□□□ -1.36
COL6A1P12109 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL6A1P12109 ADAM7-204ENST00000520720 1870 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL6A1P12109 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL6A1P12109 GRID2-204ENST00000510992 2739 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL6A1P12109 NBPF12-204ENST00000613714 2701 ntTSL 5 BASIC6.53□□□□□ -1.36
COL6A1P12109 SCOC-204ENST00000394205 1964 ntTSL 2 BASIC6.53□□□□□ -1.36
COL6A1P12109 OSBPL9-206ENST00000453295 2842 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL6A1P12109 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL6A1P12109 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL6A1P12109 DSC1-202ENST00000257198 4225 ntAPPRIS P4 TSL 2 BASIC6.52□□□□□ -1.36
COL6A1P12109 AFP-201ENST00000226359 1914 ntTSL 5 BASIC6.52□□□□□ -1.37
COL6A1P12109 C2CD5-202ENST00000396028 3463 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
COL6A1P12109 C2CD5-203ENST00000446597 3490 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
COL6A1P12109 C2CD5-206ENST00000536386 3496 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
COL6A1P12109 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL6A1P12109 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
COL6A1P12109 FTO-215ENST00000636491 1676 ntTSL 5 BASIC6.52□□□□□ -1.37
COL6A1P12109 FGF1-213ENST00000610990 3802 ntAPPRIS P1 TSL 4 BASIC6.52□□□□□ -1.37
COL6A1P12109 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC6.52□□□□□ -1.37
COL6A1P12109 AC114786.1-201ENST00000512892 1415 ntBASIC6.52□□□□□ -1.37
COL6A1P12109 PCDH18-201ENST00000344876 5906 ntAPPRIS P3 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL6A1P12109 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC6.52□□□□□ -1.37
COL6A1P12109 ZNF254-207ENST00000613065 4244 ntTSL 3 BASIC6.52□□□□□ -1.37
COL6A1P12109 AL033543.1-201ENST00000623440 13454 ntBASIC6.52□□□□□ -1.37
COL6A1P12109 SEMA3A-204ENST00000436949 2550 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.37
COL6A1P12109 OSBPL9-205ENST00000447887 2940 ntTSL 2 BASIC6.52□□□□□ -1.37
COL6A1P12109 HCG18-239ENST00000454129 4433 ntTSL 4 BASIC6.52□□□□□ -1.37
COL6A1P12109 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC6.52□□□□□ -1.37
COL6A1P12109 NUP107-211ENST00000539906 3004 ntTSL 2 BASIC6.52□□□□□ -1.37
COL6A1P12109 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.37
COL6A1P12109 CREM-217ENST00000439705 2306 ntTSL 5 BASIC6.52□□□□□ -1.37
COL6A1P12109 CD86-204ENST00000469710 1604 ntTSL 2 BASIC6.52□□□□□ -1.37
COL6A1P12109 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
COL6A1P12109 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
COL6A1P12109 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
COL6A1P12109 RNU6-249P-201ENST00000363016 102 ntBASIC6.52□□□□□ -1.37
COL6A1P12109 RNU6-623P-201ENST00000363143 105 ntBASIC6.52□□□□□ -1.37
COL6A1P12109 BMS1P3-201ENST00000372011 932 ntBASIC6.52□□□□□ -1.37
COL6A1P12109 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
COL6A1P12109 AL356131.1-201ENST00000405826 414 ntBASIC6.52□□□□□ -1.37
COL6A1P12109 RN7SKP213-201ENST00000410746 298 ntBASIC6.52□□□□□ -1.37
COL6A1P12109 TATDN1P1-201ENST00000414123 891 ntBASIC6.52□□□□□ -1.37
COL6A1P12109 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC6.52□□□□□ -1.37
COL6A1P12109 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC6.52□□□□□ -1.37
COL6A1P12109 VN1R42P-201ENST00000424651 344 ntBASIC6.52□□□□□ -1.37
COL6A1P12109 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC6.52□□□□□ -1.37
COL6A1P12109 AC009784.1-201ENST00000426484 460 ntBASIC6.52□□□□□ -1.37
COL6A1P12109 VN1R54P-201ENST00000435210 1049 ntBASIC6.52□□□□□ -1.37
COL6A1P12109 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC6.52□□□□□ -1.37
COL6A1P12109 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC6.52□□□□□ -1.37
COL6A1P12109 MTCO3P16-201ENST00000454456 754 ntBASIC6.52□□□□□ -1.37
COL6A1P12109 RPS4XP1-201ENST00000482189 787 ntBASIC6.52□□□□□ -1.37
COL6A1P12109 RPS21P4-201ENST00000487122 248 ntBASIC6.52□□□□□ -1.37
COL6A1P12109 RPL15P21-201ENST00000495592 567 ntBASIC6.52□□□□□ -1.37
COL6A1P12109 PGAM1P13-201ENST00000507497 754 ntBASIC6.52□□□□□ -1.37
COL6A1P12109 AC113420.1-201ENST00000507903 571 ntBASIC6.52□□□□□ -1.37
COL6A1P12109 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC6.52□□□□□ -1.37
COL6A1P12109 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC6.52□□□□□ -1.37
COL6A1P12109 AC018442.3-201ENST00000523025 183 ntBASIC6.52□□□□□ -1.37
COL6A1P12109 MTCYBP20-201ENST00000524239 1129 ntBASIC6.52□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 85.9 ms