Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 SBF2-201ENST00000256190 7439 ntAPPRIS P1 TSL 1 (best) BASIC7.92□□□□□ -1.14
COL9A1P20849 AC090017.1-201ENST00000548612 1779 ntBASIC7.92□□□□□ -1.14
COL9A1P20849 DPF3-203ENST00000541685 4077 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
COL9A1P20849 AC005538.2-201ENST00000623215 1864 ntBASIC7.92□□□□□ -1.14
COL9A1P20849 ZKSCAN1-201ENST00000324306 9418 ntAPPRIS P1 TSL 1 (best) BASIC7.92□□□□□ -1.14
COL9A1P20849 UBE2V1-202ENST00000371657 1973 ntTSL 4 BASIC7.92□□□□□ -1.14
COL9A1P20849 FCGR3B-209ENST00000614870 1993 ntTSL 5 BASIC7.92□□□□□ -1.14
COL9A1P20849 MPI-213ENST00000566377 2809 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
COL9A1P20849 SCD-201ENST00000370355 5362 ntAPPRIS P1 TSL 1 (best) BASIC7.92□□□□□ -1.14
COL9A1P20849 CASP10-201ENST00000272879 2073 ntTSL 2 BASIC7.92□□□□□ -1.14
COL9A1P20849 TC2N-202ENST00000360594 3751 ntAPPRIS P1 TSL 1 (best) BASIC7.92□□□□□ -1.14
COL9A1P20849 RNU4-1-201ENST00000363925 141 ntBASIC7.92□□□□□ -1.14
COL9A1P20849 RNU6-115P-201ENST00000364310 107 ntBASIC7.92□□□□□ -1.14
COL9A1P20849 VTRNA1-2-201ENST00000365241 89 ntBASIC7.92□□□□□ -1.14
COL9A1P20849 FCGR3B-202ENST00000367964 2143 ntAPPRIS P1 TSL 5 BASIC7.92□□□□□ -1.14
COL9A1P20849 RNU6-26P-201ENST00000383985 107 ntBASIC7.92□□□□□ -1.14
COL9A1P20849 MT-TP-201ENST00000387461 68 ntBASIC7.92□□□□□ -1.14
COL9A1P20849 AL353151.1-201ENST00000402406 604 ntBASIC7.92□□□□□ -1.14
COL9A1P20849 AL121835.1-201ENST00000404250 354 ntBASIC7.92□□□□□ -1.14
COL9A1P20849 AL136100.1-201ENST00000407696 330 ntBASIC7.92□□□□□ -1.14
COL9A1P20849 MIR548I2-201ENST00000408348 149 ntBASIC7.92□□□□□ -1.14
COL9A1P20849 AP000534.2-201ENST00000412729 568 ntBASIC7.92□□□□□ -1.14
COL9A1P20849 AL031005.1-201ENST00000416959 723 ntTSL 3 BASIC7.92□□□□□ -1.14
COL9A1P20849 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC7.92□□□□□ -1.14
COL9A1P20849 AL445991.1-201ENST00000450381 475 ntBASIC7.92□□□□□ -1.14
COL9A1P20849 TNS3-209ENST00000458317 1156 ntTSL 5 BASIC7.92□□□□□ -1.14
COL9A1P20849 RPS16P9-201ENST00000477220 427 ntBASIC7.92□□□□□ -1.14
COL9A1P20849 ZNF695-204ENST00000487338 826 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
COL9A1P20849 RPL22P13-201ENST00000493291 347 ntBASIC7.92□□□□□ -1.14
COL9A1P20849 HIGD1AP14-201ENST00000507617 282 ntBASIC7.92□□□□□ -1.14
COL9A1P20849 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC7.92□□□□□ -1.14
COL9A1P20849 RN7SKP24-201ENST00000515888 284 ntBASIC7.92□□□□□ -1.14
COL9A1P20849 NARSP2-201ENST00000518524 679 ntBASIC7.92□□□□□ -1.14
COL9A1P20849 HMGB1P23-201ENST00000518743 568 ntBASIC7.92□□□□□ -1.14
COL9A1P20849 AC022882.1-201ENST00000532142 501 ntBASIC7.92□□□□□ -1.14
COL9A1P20849 AC090592.1-202ENST00000533049 568 ntTSL 4 BASIC7.92□□□□□ -1.14
COL9A1P20849 OR4N1P-201ENST00000554847 949 ntBASIC7.92□□□□□ -1.14
COL9A1P20849 AL078601.3-201ENST00000573303 535 ntBASIC7.92□□□□□ -1.14
COL9A1P20849 MIR3137-201ENST00000577367 75 ntBASIC7.92□□□□□ -1.14
COL9A1P20849 MIR3157-201ENST00000578688 85 ntBASIC7.92□□□□□ -1.14
COL9A1P20849 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC7.92□□□□□ -1.14
COL9A1P20849 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC7.92□□□□□ -1.14
COL9A1P20849 AL359704.2-201ENST00000604335 521 ntBASIC7.92□□□□□ -1.14
COL9A1P20849 AC011891.2-201ENST00000604949 397 ntBASIC7.92□□□□□ -1.14
COL9A1P20849 OR10AB1P-201ENST00000609613 938 ntBASIC7.92□□□□□ -1.14
COL9A1P20849 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC7.92□□□□□ -1.14
COL9A1P20849 TP53TG1_2.1-201ENST00000611226 182 ntBASIC7.92□□□□□ -1.14
COL9A1P20849 7SK.12-201ENST00000612820 244 ntBASIC7.92□□□□□ -1.14
COL9A1P20849 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC7.92□□□□□ -1.14
COL9A1P20849 NFKB1-212ENST00000600343 4010 ntTSL 2 BASIC7.92□□□□□ -1.14
COL9A1P20849 NUSAP1-202ENST00000414849 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC7.92□□□□□ -1.14
COL9A1P20849 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
COL9A1P20849 PDXDC1-203ENST00000450288 4171 ntTSL 5 BASIC7.92□□□□□ -1.14
COL9A1P20849 FAM217B-201ENST00000358293 5152 ntAPPRIS P2 TSL 2 BASIC7.92□□□□□ -1.14
COL9A1P20849 AC022784.6-204ENST00000520390 3442 ntTSL 2 BASIC7.92□□□□□ -1.14
COL9A1P20849 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
COL9A1P20849 MEIS1-202ENST00000398506 3530 ntTSL 5 BASIC7.92□□□□□ -1.14
COL9A1P20849 BMX-202ENST00000348343 2531 ntAPPRIS P1 TSL 1 (best) BASIC7.92□□□□□ -1.14
COL9A1P20849 AC102941.1-201ENST00000567616 1537 ntBASIC7.92□□□□□ -1.14
COL9A1P20849 FAR2-202ENST00000536681 3616 ntAPPRIS P1 TSL 1 (best) BASIC7.92□□□□□ -1.14
COL9A1P20849 GC-208ENST00000513476 1567 ntTSL 5 BASIC7.92□□□□□ -1.14
COL9A1P20849 AC005520.1-201ENST00000556551 3695 ntAPPRIS P1 TSL 2 BASIC7.92□□□□□ -1.14
COL9A1P20849 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC7.92□□□□□ -1.14
COL9A1P20849 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC7.92□□□□□ -1.14
COL9A1P20849 PTPRD-204ENST00000397606 5038 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
COL9A1P20849 PTPRD-211ENST00000486161 5039 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
COL9A1P20849 ERGIC1-201ENST00000326654 3952 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
COL9A1P20849 OR51E1-202ENST00000530215 2942 ntBASIC7.92□□□□□ -1.14
COL9A1P20849 RERE-203ENST00000400907 2973 ntTSL 5 BASIC7.92□□□□□ -1.14
COL9A1P20849 MYB-235ENST00000533624 1818 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
COL9A1P20849 MYB-238ENST00000534044 1812 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
COL9A1P20849 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC7.91□□□□□ -1.14
COL9A1P20849 PTER-203ENST00000423462 3212 ntTSL 3 BASIC7.91□□□□□ -1.14
COL9A1P20849 AL391095.1-201ENST00000422519 2004 ntTSL 2 BASIC7.91□□□□□ -1.14
COL9A1P20849 AC007126.1-201ENST00000508202 4781 ntBASIC7.91□□□□□ -1.14
COL9A1P20849 FCGR3A-201ENST00000367967 2086 ntAPPRIS P1 TSL 3 BASIC7.91□□□□□ -1.14
COL9A1P20849 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC7.91□□□□□ -1.14
COL9A1P20849 ANKRD42-202ENST00000393389 4066 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
COL9A1P20849 COL28A1-201ENST00000399429 4277 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
COL9A1P20849 GABRA2-215ENST00000540012 2588 ntTSL 5 BASIC7.91□□□□□ -1.14
COL9A1P20849 U3.12-201ENST00000364498 214 ntBASIC7.91□□□□□ -1.14
COL9A1P20849 AL139327.1-201ENST00000382988 348 ntBASIC7.91□□□□□ -1.14
COL9A1P20849 TRBV9-201ENST00000390363 390 ntAPPRIS P1 BASIC7.91□□□□□ -1.14
COL9A1P20849 RN7SKP139-201ENST00000410411 293 ntBASIC7.91□□□□□ -1.14
COL9A1P20849 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC7.91□□□□□ -1.14
COL9A1P20849 AL358942.1-201ENST00000418595 1178 ntBASIC7.91□□□□□ -1.14
COL9A1P20849 ARL5AP1-201ENST00000418991 388 ntBASIC7.91□□□□□ -1.14
COL9A1P20849 AC114752.2-201ENST00000424119 404 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
COL9A1P20849 PLA2G12AP2-201ENST00000424744 264 ntBASIC7.91□□□□□ -1.14
COL9A1P20849 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC7.91□□□□□ -1.14
COL9A1P20849 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC7.91□□□□□ -1.14
COL9A1P20849 ARL5AP4-201ENST00000430731 512 ntBASIC7.91□□□□□ -1.14
COL9A1P20849 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC7.91□□□□□ -1.14
COL9A1P20849 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC7.91□□□□□ -1.14
COL9A1P20849 ATP6V1E1P1-201ENST00000439215 681 ntBASIC7.91□□□□□ -1.14
COL9A1P20849 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC7.91□□□□□ -1.14
COL9A1P20849 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC7.91□□□□□ -1.14
COL9A1P20849 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC7.91□□□□□ -1.14
COL9A1P20849 RPS27P23-201ENST00000487608 251 ntBASIC7.91□□□□□ -1.14
COL9A1P20849 AC106872.2-201ENST00000494303 480 ntBASIC7.91□□□□□ -1.14
Retrieved 100 of 98,524 protein–RNA pairs in 130.6 ms