RNA–Protein interactions for RNA: ENST00000600343.5

NFKB1-212, Transcript of nuclear factor kappa B subunit 1, humanhuman

TSL 2 BASIC

Gene NFKB1, Length 4,010 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NFKB1-212ENST00000600343 PELP1Q8IZL8 1130 aaKnown RBP17.42■□□□□ 0.38
NFKB1-212ENST00000600343 MYT1Q01538 1121 aa16.99■□□□□ 0.31
NFKB1-212ENST00000600343 HRCP23327 699 aa16.81■□□□□ 0.28
NFKB1-212ENST00000600343 PPARGC1BQ86YN6 1023 aaKnown RBP16.42■□□□□ 0.22
NFKB1-212ENST00000600343 SCAF1Q9H7N4 1312 aaKnown RBP16.31■□□□□ 0.2
NFKB1-212ENST00000600343 TTBK1Q5TCY1 1321 aaPredicted RBP16.16■□□□□ 0.18
NFKB1-212ENST00000600343 PCGF6Q9BYE7 350 aa16.11■□□□□ 0.17
NFKB1-212ENST00000600343 NISCHQ9Y2I1 1504 aa16.1■□□□□ 0.17
NFKB1-212ENST00000600343 BCL11AQ9H165 835 aa15.75■□□□□ 0.11
NFKB1-212ENST00000600343 PRKCSHP14314 528 aaPredicted RBP15.71■□□□□ 0.11
NFKB1-212ENST00000600343 ACIN1Q9UKV3 1341 aaKnown RBP15.71■□□□□ 0.11
NFKB1-212ENST00000600343 GTF3C3Q9Y5Q9 886 aa15.63■□□□□ 0.09
NFKB1-212ENST00000600343 MYO15BQ96JP2 1530 aa15.62■□□□□ 0.09
NFKB1-212ENST00000600343 NEUROD1Q13562 356 aa15.6■□□□□ 0.09
NFKB1-212ENST00000600343 CENPBP07199 599 aaPredicted RBP15.59■□□□□ 0.09
NFKB1-212ENST00000600343 FAM9AQ8IZU1 332 aaPredicted RBP15.58■□□□□ 0.08
NFKB1-212ENST00000600343 ZEB1P37275 1124 aaPredicted RBP15.56■□□□□ 0.08
NFKB1-212ENST00000600343 ERICH6Q7L0X2 663 aa15.4■□□□□ 0.06
NFKB1-212ENST00000600343 TRIM26Q12899 539 aaPredicted RBP15.39■□□□□ 0.05
NFKB1-212ENST00000600343 DCAF1Q9Y4B6 1507 aa15.38■□□□□ 0.05
NFKB1-212ENST00000600343 CCDC180Q9P1Z9 1646 aa15.32■□□□□ 0.04
NFKB1-212ENST00000600343 SUPT5HO00267 1087 aaKnown RBP15.25■□□□□ 0.03
NFKB1-212ENST00000600343 ANP32EQ9BTT0 268 aa15.25■□□□□ 0.03
NFKB1-212ENST00000600343 CHIC1Q5VXU3 224 aa15.22■□□□□ 0.03
NFKB1-212ENST00000600343 APLP2Q06481 763 aa15.21■□□□□ 0.03
NFKB1-212ENST00000600343 CSRNP3Q8WYN3 585 aa15.09■□□□□ 0.01
NFKB1-212ENST00000600343 DIEXFQ68CQ4 756 aaKnown RBP15.04■□□□□ -0
NFKB1-212ENST00000600343 SHROOM4Q9ULL8 1493 aa14.99□□□□□ -0.01
NFKB1-212ENST00000600343 LOC105371045A0A1W2PR82 267 aa14.96□□□□□ -0.01
NFKB1-212ENST00000600343 YTHDC1Q96MU7 727 aaKnown RBP14.91□□□□□ -0.02
NFKB1-212ENST00000600343 TSHZ2Q9NRE2 1034 aa14.81□□□□□ -0.04
NFKB1-212ENST00000600343 CCER1Q8TC90 406 aaPredicted RBP14.69□□□□□ -0.06
NFKB1-212ENST00000600343 SUPT16HQ9Y5B9 1047 aaKnown RBP14.68□□□□□ -0.06
NFKB1-212ENST00000600343 ANO8Q9HCE9 1232 aaPredicted RBP14.67□□□□□ -0.06
NFKB1-212ENST00000600343 TRIM41Q8WV44 630 aa14.66□□□□□ -0.06
NFKB1-212ENST00000600343 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.66□□□□□ -0.06
NFKB1-212ENST00000600343 CLSPNQ9HAW4 1339 aa14.65□□□□□ -0.06
NFKB1-212ENST00000600343 ZNF316A6NFI3 1004 aaPredicted RBP14.56□□□□□ -0.08
NFKB1-212ENST00000600343 MIER1Q8N108 512 aa14.55□□□□□ -0.08
NFKB1-212ENST00000600343 UBE2Q2Q8WVN8 375 aa14.49□□□□□ -0.09
NFKB1-212ENST00000600343 SLC24A1O60721 1099 aa14.46□□□□□ -0.09
NFKB1-212ENST00000600343 SALL2Q9Y467 1007 aaPredicted RBP14.42□□□□□ -0.1
NFKB1-212ENST00000600343 EIF5BO60841 1220 aaKnown RBP14.41□□□□□ -0.1
NFKB1-212ENST00000600343 RBM19Q9Y4C8 960 aaKnown RBP14.4□□□□□ -0.1
NFKB1-212ENST00000600343 CCDC136Q96JN2 1154 aa14.38□□□□□ -0.11
NFKB1-212ENST00000600343 MYT1LQ9UL68 1186 aa14.38□□□□□ -0.11
NFKB1-212ENST00000600343 DEKP35659 375 aaKnown RBP14.35□□□□□ -0.11
NFKB1-212ENST00000600343 MSH5O43196 834 aa14.32□□□□□ -0.12
NFKB1-212ENST00000600343 ERICH6BQ5W0A0 696 aa14.31□□□□□ -0.12
NFKB1-212ENST00000600343 BCANQ96GW7 911 aa14.3□□□□□ -0.12
NFKB1-212ENST00000600343 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.19□□□□□ -0.14
NFKB1-212ENST00000600343 PKNOX2Q96KN3 472 aa14.18□□□□□ -0.14
NFKB1-212ENST00000600343 DAXXQ9UER7 740 aaPredicted RBP14.15□□□□□ -0.14
NFKB1-212ENST00000600343 FANCIQ9NVI1 1328 aa14.15□□□□□ -0.14
NFKB1-212ENST00000600343 FKBP8Q14318 412 aa14.15□□□□□ -0.14
NFKB1-212ENST00000600343 EHMT2Q96KQ7 1210 aa14.11□□□□□ -0.15
NFKB1-212ENST00000600343 PLEKHG5O94827 1062 aa14.1□□□□□ -0.15
NFKB1-212ENST00000600343 RTN4Q9NQC3 1192 aaKnown RBP14.06□□□□□ -0.16
NFKB1-212ENST00000600343 ITGAEP38570 1179 aa14.05□□□□□ -0.16
NFKB1-212ENST00000600343 NEFLP07196 543 aa14.05□□□□□ -0.16
NFKB1-212ENST00000600343 IL27Q8NEV9 243 aa14.04□□□□□ -0.16
NFKB1-212ENST00000600343 PODXL2Q9NZ53 605 aa14.02□□□□□ -0.17
NFKB1-212ENST00000600343 NBR1Q14596 966 aa13.99□□□□□ -0.17
NFKB1-212ENST00000600343 DCAF8L2P0C7V8 631 aa13.97□□□□□ -0.17
NFKB1-212ENST00000600343 CDK11AQ9UQ88 783 aaPredicted RBP13.93□□□□□ -0.18
NFKB1-212ENST00000600343 RTL5Q5HYW3 569 aaPredicted RBP13.89□□□□□ -0.19
NFKB1-212ENST00000600343 NOP58Q9Y2X3 529 aaKnown RBP13.86□□□□□ -0.19
NFKB1-212ENST00000600343 ZCCHC6Q5VYS8 1495 aaKnown RBP13.82□□□□□ -0.2
NFKB1-212ENST00000600343 KCNH8Q96L42 1107 aa13.82□□□□□ -0.2
NFKB1-212ENST00000600343 GLIPR1L2Q4G1C9 344 aa13.79□□□□□ -0.2
NFKB1-212ENST00000600343 PAK3O75914 559 aaPredicted RBP13.75□□□□□ -0.21
NFKB1-212ENST00000600343 TIMELESSQ9UNS1 1208 aa13.73□□□□□ -0.21
NFKB1-212ENST00000600343 ZMYND15Q9H091 742 aa13.72□□□□□ -0.21
NFKB1-212ENST00000600343 VSIG10Q8N0Z9 540 aa13.69□□□□□ -0.22
NFKB1-212ENST00000600343 HNRNPUL2Q1KMD3 747 aaKnown RBP13.69□□□□□ -0.22
NFKB1-212ENST00000600343 WRNQ14191 1432 aaPredicted RBP eCLIP13.67□□□□□ -0.22
NFKB1-212ENST00000600343 RSPH6AQ9H0K4 717 aa13.67□□□□□ -0.22
NFKB1-212ENST00000600343 C11orf95C9JLR9 678 aaPredicted RBP13.66□□□□□ -0.22
NFKB1-212ENST00000600343 TRIM52Q96A61 297 aa13.64□□□□□ -0.23
NFKB1-212ENST00000600343 IRX6P78412 446 aaPredicted RBP13.61□□□□□ -0.23
NFKB1-212ENST00000600343 BRPF3Q9ULD4 1205 aa13.61□□□□□ -0.23
NFKB1-212ENST00000600343 WASHC2AQ641Q2 1341 aa13.61□□□□□ -0.23
NFKB1-212ENST00000600343 ZBTB47Q9UFB7 747 aaPredicted RBP13.6□□□□□ -0.23
NFKB1-212ENST00000600343 ANP32AP39687 249 aaKnown RBP13.59□□□□□ -0.23
NFKB1-212ENST00000600343 IPO9Q96P70 1041 aaKnown RBP13.57□□□□□ -0.24
NFKB1-212ENST00000600343 WASHC2CQ9Y4E1 1318 aa13.57□□□□□ -0.24
NFKB1-212ENST00000600343 A0A0U1RQG5 324 aaPredicted RBP13.54□□□□□ -0.24
NFKB1-212ENST00000600343 NEFMP07197 916 aa13.54□□□□□ -0.24
NFKB1-212ENST00000600343 PPP4R2Q9NY27 417 aa13.54□□□□□ -0.24
NFKB1-212ENST00000600343 USP35Q9P2H5 1018 aa13.52□□□□□ -0.25
NFKB1-212ENST00000600343 CEP162Q5TB80 1403 aa13.48□□□□□ -0.25
NFKB1-212ENST00000600343 PDE4CQ08493 712 aa13.47□□□□□ -0.25
NFKB1-212ENST00000600343 DDX10Q13206 875 aaKnown RBP13.46□□□□□ -0.25
NFKB1-212ENST00000600343 B4GALNT3Q6L9W6 998 aa13.45□□□□□ -0.26
NFKB1-212ENST00000600343 LAS1LQ9Y4W2 734 aaKnown RBP13.45□□□□□ -0.26
NFKB1-212ENST00000600343 CCER2I3L3R5 266 aa13.44□□□□□ -0.26
NFKB1-212ENST00000600343 RBM10P98175 930 aaKnown RBP13.44□□□□□ -0.26
NFKB1-212ENST00000600343 FGD1P98174 961 aa13.44□□□□□ -0.26
NFKB1-212ENST00000600343 FAM43AQ8N2R8 423 aa13.44□□□□□ -0.26
NFKB1-212ENST00000600343 AAMPQ13685 434 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms