Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 TMEM170B-201ENST00000379426 8362 ntAPPRIS P1 TSL 4 BASIC4.89□□□□□ -1.63
COL6A3P12111 FBXO40-201ENST00000338040 5929 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL6A3P12111 AC006042.3-201ENST00000454684 1469 ntBASIC4.89□□□□□ -1.63
COL6A3P12111 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC4.89□□□□□ -1.63
COL6A3P12111 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC4.89□□□□□ -1.63
COL6A3P12111 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC4.89□□□□□ -1.63
COL6A3P12111 BDH2P1-201ENST00000602288 736 ntBASIC4.89□□□□□ -1.63
COL6A3P12111 C2CD3-202ENST00000334126 7960 ntAPPRIS ALT2 TSL 5 BASIC4.89□□□□□ -1.63
COL6A3P12111 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.89□□□□□ -1.63
COL6A3P12111 AC093277.1-201ENST00000637776 1622 ntTSL 5 BASIC4.89□□□□□ -1.63
COL6A3P12111 COL12A1-211ENST00000615798 11579 ntTSL 5 BASIC4.89□□□□□ -1.63
COL6A3P12111 SLC5A12-201ENST00000280467 2269 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
COL6A3P12111 NIN-217ENST00000530997 8368 ntAPPRIS P5 TSL 5 BASIC4.89□□□□□ -1.63
COL6A3P12111 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC4.89□□□□□ -1.63
COL6A3P12111 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL6A3P12111 PAN2-202ENST00000425394 5372 ntAPPRIS ALT1 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL6A3P12111 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC4.88□□□□□ -1.63
COL6A3P12111 AC007568.1-201ENST00000422912 471 ntBASIC4.88□□□□□ -1.63
COL6A3P12111 AC091286.1-201ENST00000431233 461 ntBASIC4.88□□□□□ -1.63
COL6A3P12111 AC130448.2-201ENST00000624082 374 ntBASIC4.88□□□□□ -1.63
COL6A3P12111 AP003497.2-201ENST00000624220 967 ntBASIC4.88□□□□□ -1.63
COL6A3P12111 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC4.88□□□□□ -1.63
COL6A3P12111 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC4.88□□□□□ -1.63
COL6A3P12111 VN2R3P-201ENST00000422626 1412 ntBASIC4.88□□□□□ -1.63
COL6A3P12111 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL6A3P12111 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL6A3P12111 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC4.88□□□□□ -1.63
COL6A3P12111 GALK2-201ENST00000327171 5299 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
COL6A3P12111 DSC3-202ENST00000434452 6978 ntTSL 5 BASIC4.88□□□□□ -1.63
COL6A3P12111 LINC00861-201ENST00000500989 5330 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
COL6A3P12111 SIM1-202ENST00000369208 8430 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL6A3P12111 TP53BP1-201ENST00000263801 6346 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL6A3P12111 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC4.88□□□□□ -1.63
COL6A3P12111 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC4.88□□□□□ -1.63
COL6A3P12111 SSR3-206ENST00000476217 807 ntTSL 3 BASIC4.88□□□□□ -1.63
COL6A3P12111 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC4.88□□□□□ -1.63
COL6A3P12111 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC4.88□□□□□ -1.63
COL6A3P12111 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC4.88□□□□□ -1.63
COL6A3P12111 AP000827.1-201ENST00000527814 258 ntBASIC4.88□□□□□ -1.63
COL6A3P12111 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC4.88□□□□□ -1.63
COL6A3P12111 HYKK-203ENST00000563233 734 ntTSL 2 BASIC4.88□□□□□ -1.63
COL6A3P12111 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC4.88□□□□□ -1.63
COL6A3P12111 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
COL6A3P12111 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
COL6A3P12111 NHS-204ENST00000615422 8860 ntTSL 5 BASIC4.88□□□□□ -1.63
COL6A3P12111 LARP1BP1-201ENST00000506036 1359 ntBASIC4.88□□□□□ -1.63
COL6A3P12111 TMEM236-201ENST00000377495 5464 ntAPPRIS P1 TSL 2 BASIC4.88□□□□□ -1.63
COL6A3P12111 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC4.88□□□□□ -1.63
COL6A3P12111 RIPOR2-206ENST00000538035 5389 ntTSL 2 BASIC4.88□□□□□ -1.63
COL6A3P12111 OR14L1P-202ENST00000641545 3009 ntBASIC4.88□□□□□ -1.63
COL6A3P12111 MKL2-202ENST00000571589 8799 ntAPPRIS ALT2 TSL 2 BASIC4.88□□□□□ -1.63
COL6A3P12111 EIF4A1P3-201ENST00000411521 244 ntBASIC4.88□□□□□ -1.63
COL6A3P12111 MRPL35P4-201ENST00000453682 566 ntBASIC4.88□□□□□ -1.63
COL6A3P12111 EIF2S2P5-201ENST00000457635 968 ntBASIC4.88□□□□□ -1.63
COL6A3P12111 AC053481.1-201ENST00000467217 306 ntBASIC4.88□□□□□ -1.63
COL6A3P12111 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.88□□□□□ -1.63
COL6A3P12111 GAPDHP62-201ENST00000515313 990 ntBASIC4.88□□□□□ -1.63
COL6A3P12111 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC4.88□□□□□ -1.63
COL6A3P12111 IPO5P1-202ENST00000600039 287 ntBASIC4.88□□□□□ -1.63
COL6A3P12111 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC4.88□□□□□ -1.63
COL6A3P12111 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
COL6A3P12111 AL450345.1-202ENST00000605741 3881 ntBASIC4.87□□□□□ -1.63
COL6A3P12111 CBFA2T2-204ENST00000359606 7274 ntTSL 2 BASIC4.87□□□□□ -1.63
COL6A3P12111 METTL21EP-202ENST00000605100 2312 ntTSL 2 BASIC4.87□□□□□ -1.63
COL6A3P12111 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL6A3P12111 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
COL6A3P12111 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC4.87□□□□□ -1.63
COL6A3P12111 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
COL6A3P12111 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
COL6A3P12111 ANAPC1P1-201ENST00000426186 2145 ntBASIC4.87□□□□□ -1.63
COL6A3P12111 OR51B4-201ENST00000380224 933 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
COL6A3P12111 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC4.87□□□□□ -1.63
COL6A3P12111 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC4.87□□□□□ -1.63
COL6A3P12111 AC087499.8-201ENST00000578406 226 ntBASIC4.87□□□□□ -1.63
COL6A3P12111 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC4.87□□□□□ -1.63
COL6A3P12111 AC013731.1-201ENST00000604340 883 ntBASIC4.87□□□□□ -1.63
COL6A3P12111 PEG10-206ENST00000612941 6392 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
COL6A3P12111 PEG10-209ENST00000617526 6392 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
COL6A3P12111 ZNF626-203ENST00000601440 5963 ntTSL 4 BASIC4.87□□□□□ -1.63
COL6A3P12111 AC119674.1-213ENST00000641177 1386 ntBASIC4.87□□□□□ -1.63
COL6A3P12111 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC4.87□□□□□ -1.63
COL6A3P12111 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC4.87□□□□□ -1.63
COL6A3P12111 OR52I1-202ENST00000530443 2961 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
COL6A3P12111 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL6A3P12111 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
COL6A3P12111 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC4.87□□□□□ -1.63
COL6A3P12111 AL451136.1-201ENST00000435399 325 ntBASIC4.87□□□□□ -1.63
COL6A3P12111 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.87□□□□□ -1.63
COL6A3P12111 RPL7P9-201ENST00000468715 747 ntBASIC4.87□□□□□ -1.63
COL6A3P12111 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC4.87□□□□□ -1.63
COL6A3P12111 MECOM-203ENST00000460814 3374 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
COL6A3P12111 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC4.87□□□□□ -1.63
COL6A3P12111 PPP1R12B-204ENST00000391959 15431 ntTSL 5 BASIC4.87□□□□□ -1.63
COL6A3P12111 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL6A3P12111 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL6A3P12111 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL6A3P12111 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
COL6A3P12111 GAPVD1-203ENST00000312123 4320 ntAPPRIS ALT1 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL6A3P12111 GIGYF2-202ENST00000409196 5747 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL6A3P12111 NOX4-211ENST00000528341 1899 ntTSL 2 BASIC4.86□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 77.9 ms