Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 MTND2P4-201ENST00000445034 1004 ntBASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 AL161722.1-201ENST00000446972 1032 ntBASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 AC092967.1-201ENST00000449016 481 ntBASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 AC079776.3-201ENST00000450665 370 ntBASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 AC104339.1-201ENST00000465478 348 ntBASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 RAP1BP2-201ENST00000478270 544 ntBASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 RPL12P30-201ENST00000488389 499 ntBASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 AP002453.1-201ENST00000492327 668 ntBASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 AC108866.1-204ENST00000508362 558 ntTSL 4 BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 RNA5SP473-201ENST00000516402 125 ntBASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 AC025871.2-201ENST00000522589 511 ntTSL 3 BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 AC022509.3-201ENST00000535914 436 ntTSL 3 BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 AL158058.1-201ENST00000549515 647 ntTSL 2 BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 AC244502.3-201ENST00000555460 457 ntTSL 3 BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 AC103876.1-202ENST00000561498 369 ntTSL 3 BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 AC002519.2-203ENST00000567043 837 ntBASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 AC011497.2-201ENST00000600255 639 ntBASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 AL590229.1-201ENST00000603497 542 ntBASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 AC009220.3-201ENST00000604318 586 ntBASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 AC124312.4-201ENST00000605533 310 ntBASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 AC004921.1-201ENST00000608884 733 ntTSL 5 BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 HULC.1-201ENST00000612720 240 ntBASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 MIR4278-201ENST00000636094 69 ntBASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 AC141930.3-201ENST00000640435 762 ntTSL 5 BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 THAP6-201ENST00000311638 3549 ntAPPRIS P3 TSL 1 (best) BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 BRIP1-201ENST00000259008 6048 ntAPPRIS P2 TSL 1 (best) BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 THEMIS-206ENST00000630369 2786 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 LGALSL-202ENST00000409537 3298 ntTSL 5 BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 ASNS-209ENST00000444334 1812 ntTSL 2 BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 TBC1D23-202ENST00000394144 3677 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 BIN2P1-201ENST00000504996 1530 ntBASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 AC104662.2-201ENST00000512921 1388 ntAPPRIS P1 TSL 2 BASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 TEX9-209ENST00000561221 2297 ntTSL 5 BASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 SAMD9L-202ENST00000411955 5831 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 FAM3C2-201ENST00000312214 681 ntBASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 RNU1-65P-201ENST00000363919 148 ntBASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 Y_RNA.201-201ENST00000364052 96 ntBASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 OR1L1-202ENST00000373686 1083 ntBASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 SNORA70.9-201ENST00000384370 135 ntBASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 AL590084.2-201ENST00000401481 382 ntBASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 AL590290.1-201ENST00000405336 380 ntBASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 RN7SKP144-201ENST00000411108 279 ntBASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 HSFY4P-201ENST00000415994 1181 ntBASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 QRSL1P2-201ENST00000418582 964 ntBASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 AC098592.1-201ENST00000419352 333 ntBASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 AL121885.3-201ENST00000422833 115 ntTSL 3 BASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 AC009784.1-201ENST00000426484 460 ntBASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 AC073648.4-201ENST00000442655 781 ntBASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 RPL5P7-201ENST00000444235 813 ntBASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 AL590004.3-202ENST00000445883 451 ntBASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 MTCO2P25-201ENST00000447065 681 ntBASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 NPM1P19-201ENST00000450070 712 ntBASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 HIGD1AP16-201ENST00000450986 258 ntBASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 RPL21P134-201ENST00000453468 483 ntBASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 RANP2-201ENST00000456833 229 ntBASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 MTND4LP3-201ENST00000468320 276 ntBASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 SYPL1P1-201ENST00000473622 768 ntBASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 OR2A20P-203ENST00000498397 1268 ntBASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 MGC32805-204ENST00000509993 783 ntTSL 2 BASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 HSD3BP3-201ENST00000514706 994 ntBASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 TAS2R46-201ENST00000533467 930 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 LDHC-203ENST00000535809 757 ntTSL 5 BASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC6.19□□□□□ -1.42
TRIM39Q9HCM9 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC6.19□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 122.9 ms