RNA–Protein interactions for RNA: ENST00000550847.1

RAB3IP-214, Transcript of RAB3A interacting protein, humanhuman

TSL 3 BASIC

Gene RAB3IP, Length 670 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB3IP-214ENST00000550847 AEBP2Q6ZN18 517 aaPredicted RBP25.45■■□□□ 1.66
RAB3IP-214ENST00000550847 CHIC1Q5VXU3 224 aa24.55■■□□□ 1.52
RAB3IP-214ENST00000550847 PHF23Q9BUL5 403 aaPredicted RBP21.66■■□□□ 1.06
RAB3IP-214ENST00000550847 SENP3Q9H4L4 574 aaPredicted RBP21.48■■□□□ 1.03
RAB3IP-214ENST00000550847 FOXD1Q16676 465 aa20.05■□□□□ 0.8
RAB3IP-214ENST00000550847 PLPPR3Q6T4P5 718 aa19.78■□□□□ 0.76
RAB3IP-214ENST00000550847 PPP6R1Q9UPN7 881 aa19.19■□□□□ 0.66
RAB3IP-214ENST00000550847 ADRA2BP18089 450 aa19.12■□□□□ 0.65
RAB3IP-214ENST00000550847 PIAS4Q8N2W9 510 aaPredicted RBP18.81■□□□□ 0.6
RAB3IP-214ENST00000550847 MSH5O43196 834 aa18.46■□□□□ 0.55
RAB3IP-214ENST00000550847 PPP4R3CPQ6ZMV5 832 aa17.45■□□□□ 0.38
RAB3IP-214ENST00000550847 MAPK8IP2Q13387 824 aaPredicted RBP17.44■□□□□ 0.38
RAB3IP-214ENST00000550847 SCAF1Q9H7N4 1312 aaKnown RBP17.3■□□□□ 0.36
RAB3IP-214ENST00000550847 POTEDQ86YR6 584 aa17.29■□□□□ 0.36
RAB3IP-214ENST00000550847 DMRT2Q9Y5R5 561 aa17.16■□□□□ 0.34
RAB3IP-214ENST00000550847 CNKSR2Q8WXI2 1034 aa16.96■□□□□ 0.31
RAB3IP-214ENST00000550847 KCNA4P22459 653 aa16.86■□□□□ 0.29
RAB3IP-214ENST00000550847 NCBP3Q53F19 620 aaKnown RBP16.82■□□□□ 0.28
RAB3IP-214ENST00000550847 NPM3O75607 178 aaKnown RBP16.72■□□□□ 0.27
RAB3IP-214ENST00000550847 HOXD11P31277 338 aaPredicted RBP16.72■□□□□ 0.27
RAB3IP-214ENST00000550847 RNF216Q9NWF9 866 aaPredicted RBP16.7■□□□□ 0.26
RAB3IP-214ENST00000550847 DCAF8L1A6NGE4 600 aa16.39■□□□□ 0.21
RAB3IP-214ENST00000550847 DNAJC5BQ9UF47 199 aa16.21■□□□□ 0.19
RAB3IP-214ENST00000550847 SLC4A1APQ9BWU0 796 aaKnown RBP15.95■□□□□ 0.14
RAB3IP-214ENST00000550847 SLC4A2P04920 1241 aa15.88■□□□□ 0.13
RAB3IP-214ENST00000550847 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.88■□□□□ 0.13
RAB3IP-214ENST00000550847 RNF39Q9H2S5 420 aa15.88■□□□□ 0.13
RAB3IP-214ENST00000550847 U3KPZ7 1027 aaPredicted RBP15.69■□□□□ 0.1
RAB3IP-214ENST00000550847 C1QBPQ07021 282 aaKnown RBP15.6■□□□□ 0.09
RAB3IP-214ENST00000550847 ZBTB22O15209 634 aa15.59■□□□□ 0.09
RAB3IP-214ENST00000550847 CACNB1Q02641 598 aaPredicted RBP15.56■□□□□ 0.08
RAB3IP-214ENST00000550847 FOXD4L1Q9NU39 408 aa15.51■□□□□ 0.07
RAB3IP-214ENST00000550847 MYCNP04198 464 aaPredicted RBP15.38■□□□□ 0.05
RAB3IP-214ENST00000550847 SPINK5Q9NQ38 1064 aaPredicted RBP15.34■□□□□ 0.05
RAB3IP-214ENST00000550847 EHMT2Q96KQ7 1210 aa15.3■□□□□ 0.04
RAB3IP-214ENST00000550847 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.25■□□□□ 0.03
RAB3IP-214ENST00000550847 HNRNPUL2Q1KMD3 747 aaKnown RBP15.25■□□□□ 0.03
RAB3IP-214ENST00000550847 CSRNP3Q8WYN3 585 aa15.25■□□□□ 0.03
RAB3IP-214ENST00000550847 SAMD1Q6SPF0 538 aaPredicted RBP15.23■□□□□ 0.03
RAB3IP-214ENST00000550847 CAPN15O75808 1086 aa15.19■□□□□ 0.02
RAB3IP-214ENST00000550847 ATF5Q9Y2D1 282 aaPredicted RBP15.12■□□□□ 0.01
RAB3IP-214ENST00000550847 APLP2Q06481 763 aa15.1■□□□□ 0.01
RAB3IP-214ENST00000550847 TRHP20396 242 aaPredicted RBP15.08■□□□□ 0
RAB3IP-214ENST00000550847 DSG3P32926 999 aa15.04■□□□□ -0
RAB3IP-214ENST00000550847 ZNF219Q9P2Y4 722 aaPredicted RBP15.01□□□□□ -0.01
RAB3IP-214ENST00000550847 ABCB7O75027 752 aa14.95□□□□□ -0.02
RAB3IP-214ENST00000550847 ATXN8OSP0DMR3 200 aa14.94□□□□□ -0.02
RAB3IP-214ENST00000550847 POLA2Q14181 598 aa14.81□□□□□ -0.04
RAB3IP-214ENST00000550847 MKRN4PQ13434 485 aaPredicted RBP14.44□□□□□ -0.1
RAB3IP-214ENST00000550847 ZBTB12Q9Y330 459 aaPredicted RBP14.44□□□□□ -0.1
RAB3IP-214ENST00000550847 OSCARQ8IYS5 282 aa14.35□□□□□ -0.11
RAB3IP-214ENST00000550847 FBLN2P98095 1184 aa14.31□□□□□ -0.12
RAB3IP-214ENST00000550847 RBM42Q9BTD8 480 aaKnown RBP14.21□□□□□ -0.13
RAB3IP-214ENST00000550847 SPDYE2BA6NHP3 402 aa14.08□□□□□ -0.16
RAB3IP-214ENST00000550847 SPDYE6P0CI01 402 aa14.08□□□□□ -0.16
RAB3IP-214ENST00000550847 SPDYE2Q495Y8 402 aa14.08□□□□□ -0.16
RAB3IP-214ENST00000550847 AKT1S1Q96B36 256 aa14.04□□□□□ -0.16
RAB3IP-214ENST00000550847 SSUH2Q9Y2M2 353 aa14.02□□□□□ -0.17
RAB3IP-214ENST00000550847 ZNF692Q9BU19 519 aaPredicted RBP14.01□□□□□ -0.17
RAB3IP-214ENST00000550847 REM2Q8IYK8 340 aaPredicted RBP13.96□□□□□ -0.17
RAB3IP-214ENST00000550847 SPDYE4A6NLX3 237 aa13.91□□□□□ -0.18
RAB3IP-214ENST00000550847 PABPN1Q86U42 306 aaKnown RBP eCLIP13.85□□□□□ -0.19
RAB3IP-214ENST00000550847 PITPNM1O00562 1244 aa13.83□□□□□ -0.2
RAB3IP-214ENST00000550847 CHRDL2Q6WN34 429 aa13.8□□□□□ -0.2
RAB3IP-214ENST00000550847 FKBP8Q14318 412 aa13.75□□□□□ -0.21
RAB3IP-214ENST00000550847 PROM2Q8N271 834 aa13.71□□□□□ -0.21
RAB3IP-214ENST00000550847 SPDYE1Q8NFV5 336 aaPredicted RBP13.7□□□□□ -0.22
RAB3IP-214ENST00000550847 CLEC11AQ9Y240 323 aa13.68□□□□□ -0.22
RAB3IP-214ENST00000550847 POTEHQ6S545 545 aa13.61□□□□□ -0.23
RAB3IP-214ENST00000550847 PIP4P2Q8N4L2 257 aa13.61□□□□□ -0.23
RAB3IP-214ENST00000550847 FXR2P51116 673 aaKnown RBP eCLIP13.59□□□□□ -0.23
RAB3IP-214ENST00000550847 PRR29P0C7W0 189 aa13.51□□□□□ -0.25
RAB3IP-214ENST00000550847 STAG3Q9UJ98 1225 aa13.47□□□□□ -0.25
RAB3IP-214ENST00000550847 CHADLQ6NUI6 762 aa13.45□□□□□ -0.26
RAB3IP-214ENST00000550847 PRKAR2AP13861 404 aaKnown RBP13.44□□□□□ -0.26
RAB3IP-214ENST00000550847 CREBZFQ9NS37 354 aa13.38□□□□□ -0.27
RAB3IP-214ENST00000550847 FARP1Q9Y4F1 1045 aaPredicted RBP13.26□□□□□ -0.29
RAB3IP-214ENST00000550847 MNX1P50219 401 aaPredicted RBP13.25□□□□□ -0.29
RAB3IP-214ENST00000550847 FBXO3Q9UK99 471 aa13.21□□□□□ -0.29
RAB3IP-214ENST00000550847 MIER1Q8N108 512 aa13.19□□□□□ -0.3
RAB3IP-214ENST00000550847 EVX2Q03828 476 aa13.18□□□□□ -0.3
RAB3IP-214ENST00000550847 HAX1O00165 279 aa13.16□□□□□ -0.3
RAB3IP-214ENST00000550847 C19orf67A6NJJ6 358 aa13.14□□□□□ -0.31
RAB3IP-214ENST00000550847 VASPP50552 380 aaPredicted RBP13.13□□□□□ -0.31
RAB3IP-214ENST00000550847 PLCD3Q8N3E9 789 aa13.12□□□□□ -0.31
RAB3IP-214ENST00000550847 CD44P16070 742 aaKnown RBP13.04□□□□□ -0.32
RAB3IP-214ENST00000550847 PLEKHG5O94827 1062 aa13.02□□□□□ -0.33
RAB3IP-214ENST00000550847 NPM1P06748 294 aaKnown RBP eCLIP13.01□□□□□ -0.33
RAB3IP-214ENST00000550847 IFNLR1Q8IU57 520 aaPredicted RBP12.99□□□□□ -0.33
RAB3IP-214ENST00000550847 SP7Q8TDD2 431 aaPredicted RBP12.98□□□□□ -0.33
RAB3IP-214ENST00000550847 RASEFQ8IZ41 740 aa12.96□□□□□ -0.33
RAB3IP-214ENST00000550847 NUBP1P53384 320 aa12.95□□□□□ -0.34
RAB3IP-214ENST00000550847 ZBTB47Q9UFB7 747 aaPredicted RBP12.93□□□□□ -0.34
RAB3IP-214ENST00000550847 ZRANB1Q9UGI0 708 aa12.93□□□□□ -0.34
RAB3IP-214ENST00000550847 KLHL34Q8N239 644 aa12.89□□□□□ -0.35
RAB3IP-214ENST00000550847 TSPYL2Q9H2G4 693 aaPredicted RBP12.89□□□□□ -0.35
RAB3IP-214ENST00000550847 ZNF579Q8NAF0 562 aaKnown RBP12.87□□□□□ -0.35
RAB3IP-214ENST00000550847 PHF12Q96QT6 1004 aa12.85□□□□□ -0.35
RAB3IP-214ENST00000550847 CCDC61Q9Y6R9 512 aa12.83□□□□□ -0.36
RAB3IP-214ENST00000550847 GABBR2O75899 941 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms