Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC4.7□□□□□ -1.66
SSX3Q99909 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC4.7□□□□□ -1.66
SSX3Q99909 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC4.7□□□□□ -1.66
SSX3Q99909 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC4.7□□□□□ -1.66
SSX3Q99909 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
SSX3Q99909 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SSX3Q99909 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
SSX3Q99909 AC017002.4-201ENST00000604721 1525 ntBASIC4.7□□□□□ -1.66
SSX3Q99909 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SSX3Q99909 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
SSX3Q99909 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC4.69□□□□□ -1.66
SSX3Q99909 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.69□□□□□ -1.66
SSX3Q99909 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC4.69□□□□□ -1.66
SSX3Q99909 TMEM161B-211ENST00000512429 1796 ntTSL 2 BASIC4.69□□□□□ -1.66
SSX3Q99909 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC4.69□□□□□ -1.66
SSX3Q99909 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
SSX3Q99909 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SSX3Q99909 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC4.69□□□□□ -1.66
SSX3Q99909 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
SSX3Q99909 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC4.69□□□□□ -1.66
SSX3Q99909 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC4.69□□□□□ -1.66
SSX3Q99909 RNU6-40P-201ENST00000384254 107 ntBASIC4.69□□□□□ -1.66
SSX3Q99909 AC087752.1-201ENST00000391360 558 ntBASIC4.69□□□□□ -1.66
SSX3Q99909 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SSX3Q99909 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SSX3Q99909 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC4.69□□□□□ -1.66
SSX3Q99909 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC4.69□□□□□ -1.66
SSX3Q99909 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC4.69□□□□□ -1.66
SSX3Q99909 RPL34P6-201ENST00000432390 345 ntBASIC4.69□□□□□ -1.66
SSX3Q99909 HMGB3P24-201ENST00000433260 622 ntBASIC4.69□□□□□ -1.66
SSX3Q99909 RPL12P46-201ENST00000436610 195 ntBASIC4.69□□□□□ -1.66
SSX3Q99909 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC4.69□□□□□ -1.66
SSX3Q99909 LRRC37A14P-201ENST00000452297 462 ntBASIC4.69□□□□□ -1.66
SSX3Q99909 RNU7-27P-201ENST00000459281 62 ntBASIC4.69□□□□□ -1.66
SSX3Q99909 AC022215.1-201ENST00000481770 362 ntBASIC4.69□□□□□ -1.66
SSX3Q99909 AC073610.1-201ENST00000489971 396 ntBASIC4.69□□□□□ -1.66
SSX3Q99909 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC4.69□□□□□ -1.66
SSX3Q99909 AC005912.1-201ENST00000495392 255 ntBASIC4.69□□□□□ -1.66
SSX3Q99909 RN7SL101P-201ENST00000496350 279 ntBASIC4.69□□□□□ -1.66
SSX3Q99909 AC139720.1-201ENST00000509497 512 ntTSL 3 BASIC4.69□□□□□ -1.66
SSX3Q99909 LINC02432-203ENST00000511213 719 ntTSL 2 BASIC4.69□□□□□ -1.66
SSX3Q99909 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC4.69□□□□□ -1.66
SSX3Q99909 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC4.69□□□□□ -1.66
SSX3Q99909 MIR2117-201ENST00000516780 80 ntBASIC4.69□□□□□ -1.66
SSX3Q99909 HMGB1P46-201ENST00000520062 610 ntBASIC4.69□□□□□ -1.66
SSX3Q99909 IGKV1OR22-1-201ENST00000521497 360 ntBASIC4.69□□□□□ -1.66
SSX3Q99909 AP003168.1-201ENST00000530091 307 ntBASIC4.69□□□□□ -1.66
SSX3Q99909 AC126615.2-201ENST00000553003 515 ntBASIC4.69□□□□□ -1.66
SSX3Q99909 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC4.69□□□□□ -1.66
SSX3Q99909 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC4.69□□□□□ -1.66
SSX3Q99909 AC007346.2-201ENST00000564816 892 ntBASIC4.69□□□□□ -1.66
SSX3Q99909 AC007601.2-201ENST00000566957 502 ntTSL 3 BASIC4.69□□□□□ -1.66
SSX3Q99909 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC4.69□□□□□ -1.66
SSX3Q99909 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC4.69□□□□□ -1.66
SSX3Q99909 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC4.69□□□□□ -1.66
SSX3Q99909 RN7SL753P-201ENST00000581238 290 ntBASIC4.69□□□□□ -1.66
SSX3Q99909 SS18L2P2-201ENST00000583960 235 ntBASIC4.69□□□□□ -1.66
SSX3Q99909 LINC00663-202ENST00000586816 306 ntTSL 2 BASIC4.69□□□□□ -1.66
SSX3Q99909 AC015802.2-201ENST00000589690 189 ntBASIC4.69□□□□□ -1.66
SSX3Q99909 NANOGP3-201ENST00000605855 286 ntBASIC4.69□□□□□ -1.66
SSX3Q99909 AC090948.2-201ENST00000607363 564 ntBASIC4.69□□□□□ -1.66
SSX3Q99909 AL162574.2-201ENST00000614618 657 ntBASIC4.69□□□□□ -1.66
SSX3Q99909 RN7SL544P-201ENST00000617232 284 ntBASIC4.69□□□□□ -1.66
SSX3Q99909 RN7SL763P-201ENST00000620922 284 ntBASIC4.69□□□□□ -1.66
SSX3Q99909 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC4.69□□□□□ -1.66
SSX3Q99909 AC087565.3-203ENST00000641018 837 ntBASIC4.69□□□□□ -1.66
SSX3Q99909 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
SSX3Q99909 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.69□□□□□ -1.66
SSX3Q99909 AC005154.1-228ENST00000454922 1405 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SSX3Q99909 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC4.69□□□□□ -1.66
SSX3Q99909 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SSX3Q99909 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SSX3Q99909 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC4.69□□□□□ -1.66
SSX3Q99909 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC4.69□□□□□ -1.66
SSX3Q99909 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SSX3Q99909 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SSX3Q99909 AL138820.1-201ENST00000617901 5305 ntBASIC4.68□□□□□ -1.66
SSX3Q99909 AC073136.1-201ENST00000449426 2884 ntBASIC4.68□□□□□ -1.66
SSX3Q99909 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SSX3Q99909 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SSX3Q99909 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SSX3Q99909 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC4.68□□□□□ -1.66
SSX3Q99909 HMGB1P20-201ENST00000402555 677 ntBASIC4.68□□□□□ -1.66
SSX3Q99909 AL512422.1-201ENST00000407033 553 ntBASIC4.68□□□□□ -1.66
SSX3Q99909 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC4.68□□□□□ -1.66
SSX3Q99909 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC4.68□□□□□ -1.66
SSX3Q99909 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC4.68□□□□□ -1.66
SSX3Q99909 AC019205.1-201ENST00000421830 730 ntBASIC4.68□□□□□ -1.66
SSX3Q99909 DPY19L1P2-201ENST00000426647 915 ntBASIC4.68□□□□□ -1.66
SSX3Q99909 AL158073.1-201ENST00000426848 1104 ntBASIC4.68□□□□□ -1.66
SSX3Q99909 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC4.68□□□□□ -1.66
SSX3Q99909 FAR1P1-201ENST00000427163 934 ntBASIC4.68□□□□□ -1.66
SSX3Q99909 RPS26P4-201ENST00000431743 355 ntBASIC4.68□□□□□ -1.66
SSX3Q99909 RPS12P17-201ENST00000438591 377 ntBASIC4.68□□□□□ -1.66
SSX3Q99909 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC4.68□□□□□ -1.66
SSX3Q99909 MTCYBP12-201ENST00000440559 1134 ntBASIC4.68□□□□□ -1.66
SSX3Q99909 AL691517.1-201ENST00000440833 1235 ntBASIC4.68□□□□□ -1.66
SSX3Q99909 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC4.68□□□□□ -1.66
SSX3Q99909 CASP12-206ENST00000446862 1196 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SSX3Q99909 RPL12P39-201ENST00000455456 496 ntBASIC4.68□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 117.9 ms