Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC069366.1-201ENST00000583159 838 ntBASIC6.12□□□□□ -1.43
CCDC88AQ3V6T2 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC6.12□□□□□ -1.43
CCDC88AQ3V6T2 ST6GALNAC3-201ENST00000328299 6861 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC88AQ3V6T2 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC88AQ3V6T2 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC88AQ3V6T2 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC88AQ3V6T2 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC6.12□□□□□ -1.43
CCDC88AQ3V6T2 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC6.12□□□□□ -1.43
CCDC88AQ3V6T2 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC6.12□□□□□ -1.43
CCDC88AQ3V6T2 LRMDA-208ENST00000496424 3923 ntTSL 2 BASIC6.12□□□□□ -1.43
CCDC88AQ3V6T2 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC6.12□□□□□ -1.43
CCDC88AQ3V6T2 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC88AQ3V6T2 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC88AQ3V6T2 CPB2-AS1-201ENST00000415033 747 ntTSL 3 BASIC6.11□□□□□ -1.43
CCDC88AQ3V6T2 BX510359.2-201ENST00000417920 305 ntBASIC6.11□□□□□ -1.43
CCDC88AQ3V6T2 CYCSP11-201ENST00000436426 315 ntBASIC6.11□□□□□ -1.43
CCDC88AQ3V6T2 AC079064.1-201ENST00000528365 362 ntBASIC6.11□□□□□ -1.43
CCDC88AQ3V6T2 AP001781.1-201ENST00000530977 207 ntBASIC6.11□□□□□ -1.43
CCDC88AQ3V6T2 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC6.11□□□□□ -1.43
CCDC88AQ3V6T2 AC021106.3-201ENST00000623925 531 ntBASIC6.11□□□□□ -1.43
CCDC88AQ3V6T2 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC88AQ3V6T2 OPRM1-217ENST00000522236 2459 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC88AQ3V6T2 AQR-201ENST00000156471 9694 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC88AQ3V6T2 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC88AQ3V6T2 JAKMIP2-205ENST00000507386 5915 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC88AQ3V6T2 DMD-205ENST00000359836 7339 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC88AQ3V6T2 DTNA-207ENST00000444659 6343 ntAPPRIS ALT2 TSL 5 BASIC6.11□□□□□ -1.43
CCDC88AQ3V6T2 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC6.11□□□□□ -1.43
CCDC88AQ3V6T2 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC88AQ3V6T2 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC88AQ3V6T2 RNA5SP223-201ENST00000365174 120 ntBASIC6.11□□□□□ -1.43
CCDC88AQ3V6T2 RNA5SP345-201ENST00000410646 108 ntBASIC6.11□□□□□ -1.43
CCDC88AQ3V6T2 GPS2P1-201ENST00000411761 986 ntBASIC6.11□□□□□ -1.43
CCDC88AQ3V6T2 HYALP1-201ENST00000417674 1279 ntBASIC6.11□□□□□ -1.43
CCDC88AQ3V6T2 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC6.11□□□□□ -1.43
CCDC88AQ3V6T2 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC6.11□□□□□ -1.43
CCDC88AQ3V6T2 OR1H1P-201ENST00000448731 937 ntBASIC6.11□□□□□ -1.43
CCDC88AQ3V6T2 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC88AQ3V6T2 IGKV2D-10-201ENST00000520194 281 ntBASIC6.11□□□□□ -1.43
CCDC88AQ3V6T2 AC022360.1-201ENST00000521058 340 ntBASIC6.11□□□□□ -1.43
CCDC88AQ3V6T2 AC084824.1-201ENST00000550917 1005 ntBASIC6.11□□□□□ -1.43
CCDC88AQ3V6T2 AC040173.1-201ENST00000572479 580 ntTSL 4 BASIC6.11□□□□□ -1.43
CCDC88AQ3V6T2 MIR3138-201ENST00000585238 82 ntBASIC6.11□□□□□ -1.43
CCDC88AQ3V6T2 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC88AQ3V6T2 CCDC58P3-201ENST00000590792 430 ntBASIC6.11□□□□□ -1.43
CCDC88AQ3V6T2 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC6.11□□□□□ -1.43
CCDC88AQ3V6T2 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC6.11□□□□□ -1.43
CCDC88AQ3V6T2 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC88AQ3V6T2 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC88AQ3V6T2 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC88AQ3V6T2 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC6.1□□□□□ -1.43
CCDC88AQ3V6T2 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC88AQ3V6T2 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC6.1□□□□□ -1.43
CCDC88AQ3V6T2 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC6.1□□□□□ -1.43
CCDC88AQ3V6T2 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC88AQ3V6T2 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC88AQ3V6T2 MFSD8-220ENST00000641243 1422 ntBASIC6.1□□□□□ -1.43
CCDC88AQ3V6T2 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC6.1□□□□□ -1.43
CCDC88AQ3V6T2 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC88AQ3V6T2 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC88AQ3V6T2 TTC3-201ENST00000354749 9084 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC88AQ3V6T2 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC88AQ3V6T2 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
CCDC88AQ3V6T2 IGKV7-3-201ENST00000357453 298 ntBASIC6.1□□□□□ -1.43
CCDC88AQ3V6T2 RNA5SP28-201ENST00000363841 119 ntBASIC6.1□□□□□ -1.43
CCDC88AQ3V6T2 AC012358.3-203ENST00000366287 1110 ntTSL 3 BASIC6.1□□□□□ -1.43
CCDC88AQ3V6T2 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC88AQ3V6T2 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC88AQ3V6T2 AL354766.1-201ENST00000423396 542 ntBASIC6.1□□□□□ -1.43
CCDC88AQ3V6T2 AL158073.1-201ENST00000426848 1104 ntBASIC6.1□□□□□ -1.43
CCDC88AQ3V6T2 NDUFB4P8-201ENST00000435351 367 ntBASIC6.1□□□□□ -1.43
CCDC88AQ3V6T2 EIF2S2P2-201ENST00000447161 982 ntBASIC6.1□□□□□ -1.43
CCDC88AQ3V6T2 AC022133.1-201ENST00000490961 571 ntBASIC6.1□□□□□ -1.43
CCDC88AQ3V6T2 AC104971.1-201ENST00000495117 578 ntBASIC6.1□□□□□ -1.43
CCDC88AQ3V6T2 RNA5SP464-201ENST00000516251 108 ntBASIC6.1□□□□□ -1.43
CCDC88AQ3V6T2 AP000619.2-201ENST00000546014 969 ntBASIC6.1□□□□□ -1.43
CCDC88AQ3V6T2 MIR92B-201ENST00000607575 96 ntBASIC6.1□□□□□ -1.43
CCDC88AQ3V6T2 AL162574.1-201ENST00000615702 950 ntBASIC6.1□□□□□ -1.43
CCDC88AQ3V6T2 AC026367.3-201ENST00000619032 590 ntBASIC6.1□□□□□ -1.43
CCDC88AQ3V6T2 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC6.1□□□□□ -1.43
CCDC88AQ3V6T2 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC88AQ3V6T2 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC6.1□□□□□ -1.43
CCDC88AQ3V6T2 ALB-202ENST00000401494 1659 ntTSL 5 BASIC6.1□□□□□ -1.43
CCDC88AQ3V6T2 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC88AQ3V6T2 NCLP2-201ENST00000416078 1462 ntBASIC6.1□□□□□ -1.43
CCDC88AQ3V6T2 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC88AQ3V6T2 RMST-209ENST00000639542 3269 ntTSL 5 BASIC6.09□□□□□ -1.43
CCDC88AQ3V6T2 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC6.09□□□□□ -1.43
CCDC88AQ3V6T2 SULF1-201ENST00000260128 5710 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.43
CCDC88AQ3V6T2 ENKUR-201ENST00000331161 3382 ntAPPRIS P2 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC88AQ3V6T2 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC88AQ3V6T2 SNORA48.4-201ENST00000391089 134 ntBASIC6.09□□□□□ -1.43
CCDC88AQ3V6T2 AC023141.6-201ENST00000429418 337 ntBASIC6.09□□□□□ -1.43
CCDC88AQ3V6T2 AL359265.1-201ENST00000440296 795 ntBASIC6.09□□□□□ -1.43
CCDC88AQ3V6T2 IGHV5-78-201ENST00000450948 295 ntBASIC6.09□□□□□ -1.43
CCDC88AQ3V6T2 AL691482.1-201ENST00000453255 87 ntBASIC6.09□□□□□ -1.43
CCDC88AQ3V6T2 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC6.09□□□□□ -1.43
CCDC88AQ3V6T2 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC6.09□□□□□ -1.43
CCDC88AQ3V6T2 AC005154.1-213ENST00000578572 445 ntTSL 3 BASIC6.09□□□□□ -1.43
CCDC88AQ3V6T2 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC6.09□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 72.9 ms