Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
HIF3AQ9Y2N7 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
HIF3AQ9Y2N7 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HIF3AQ9Y2N7 AL032819.2-201ENST00000624543 2162 ntBASIC17.63■□□□□ 0.41
HIF3AQ9Y2N7 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC17.63■□□□□ 0.41
HIF3AQ9Y2N7 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
HIF3AQ9Y2N7 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
HIF3AQ9Y2N7 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HIF3AQ9Y2N7 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
HIF3AQ9Y2N7 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
HIF3AQ9Y2N7 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC17.63■□□□□ 0.41
HIF3AQ9Y2N7 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC17.63■□□□□ 0.41
HIF3AQ9Y2N7 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC17.63■□□□□ 0.41
HIF3AQ9Y2N7 MAP2K4P1-201ENST00000438453 1195 ntBASIC17.63■□□□□ 0.41
HIF3AQ9Y2N7 RHEB-204ENST00000472642 900 ntTSL 3 BASIC17.63■□□□□ 0.41
HIF3AQ9Y2N7 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
HIF3AQ9Y2N7 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
HIF3AQ9Y2N7 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC17.63■□□□□ 0.41
HIF3AQ9Y2N7 HLA-B-256ENST00000639848 1089 ntBASIC17.63■□□□□ 0.41
HIF3AQ9Y2N7 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC17.63■□□□□ 0.41
HIF3AQ9Y2N7 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HIF3AQ9Y2N7 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
HIF3AQ9Y2N7 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
HIF3AQ9Y2N7 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HIF3AQ9Y2N7 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC17.62■□□□□ 0.41
HIF3AQ9Y2N7 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
HIF3AQ9Y2N7 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
HIF3AQ9Y2N7 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HIF3AQ9Y2N7 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
HIF3AQ9Y2N7 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HIF3AQ9Y2N7 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
HIF3AQ9Y2N7 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HIF3AQ9Y2N7 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC17.62■□□□□ 0.41
HIF3AQ9Y2N7 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
HIF3AQ9Y2N7 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
HIF3AQ9Y2N7 AC097658.1-201ENST00000475555 843 ntBASIC17.62■□□□□ 0.41
HIF3AQ9Y2N7 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
HIF3AQ9Y2N7 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC17.62■□□□□ 0.41
HIF3AQ9Y2N7 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
HIF3AQ9Y2N7 PFKL-212ENST00000628044 129 ntTSL 3 BASIC17.62■□□□□ 0.41
HIF3AQ9Y2N7 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HIF3AQ9Y2N7 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
HIF3AQ9Y2N7 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC17.62■□□□□ 0.41
HIF3AQ9Y2N7 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
HIF3AQ9Y2N7 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC17.62■□□□□ 0.41
HIF3AQ9Y2N7 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
HIF3AQ9Y2N7 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HIF3AQ9Y2N7 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC17.62■□□□□ 0.41
HIF3AQ9Y2N7 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HIF3AQ9Y2N7 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC17.61■□□□□ 0.41
HIF3AQ9Y2N7 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
HIF3AQ9Y2N7 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HIF3AQ9Y2N7 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC17.61■□□□□ 0.41
HIF3AQ9Y2N7 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HIF3AQ9Y2N7 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HIF3AQ9Y2N7 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
HIF3AQ9Y2N7 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC17.61■□□□□ 0.41
HIF3AQ9Y2N7 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC17.61■□□□□ 0.41
HIF3AQ9Y2N7 MAX-217ENST00000557277 728 ntTSL 3 BASIC17.61■□□□□ 0.41
HIF3AQ9Y2N7 AC006557.6-201ENST00000623071 864 ntBASIC17.61■□□□□ 0.41
HIF3AQ9Y2N7 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
HIF3AQ9Y2N7 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC17.61■□□□□ 0.41
HIF3AQ9Y2N7 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
HIF3AQ9Y2N7 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC17.61■□□□□ 0.41
HIF3AQ9Y2N7 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HIF3AQ9Y2N7 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
HIF3AQ9Y2N7 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
HIF3AQ9Y2N7 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HIF3AQ9Y2N7 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC17.61■□□□□ 0.41
HIF3AQ9Y2N7 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HIF3AQ9Y2N7 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HIF3AQ9Y2N7 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HIF3AQ9Y2N7 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
HIF3AQ9Y2N7 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HIF3AQ9Y2N7 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC17.6■□□□□ 0.41
HIF3AQ9Y2N7 AC087289.5-201ENST00000586076 3175 ntBASIC17.6■□□□□ 0.41
HIF3AQ9Y2N7 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
HIF3AQ9Y2N7 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HIF3AQ9Y2N7 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HIF3AQ9Y2N7 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC17.6■□□□□ 0.41
HIF3AQ9Y2N7 GATS-209ENST00000454084 1030 ntTSL 3 BASIC17.6■□□□□ 0.41
HIF3AQ9Y2N7 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC17.6■□□□□ 0.41
HIF3AQ9Y2N7 TK2-208ENST00000545043 1120 ntTSL 2 BASIC17.6■□□□□ 0.41
HIF3AQ9Y2N7 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC17.6■□□□□ 0.41
HIF3AQ9Y2N7 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
HIF3AQ9Y2N7 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC17.6■□□□□ 0.41
HIF3AQ9Y2N7 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC17.6■□□□□ 0.41
HIF3AQ9Y2N7 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC17.6■□□□□ 0.41
HIF3AQ9Y2N7 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC17.6■□□□□ 0.41
HIF3AQ9Y2N7 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
HIF3AQ9Y2N7 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
HIF3AQ9Y2N7 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HIF3AQ9Y2N7 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC17.6■□□□□ 0.41
HIF3AQ9Y2N7 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HIF3AQ9Y2N7 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HIF3AQ9Y2N7 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HIF3AQ9Y2N7 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC17.6■□□□□ 0.41
HIF3AQ9Y2N7 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC17.6■□□□□ 0.41
HIF3AQ9Y2N7 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HIF3AQ9Y2N7 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms