Protein–RNA interactions for Protein: Q9HCU0

CD248, Endosialin, humanhuman

Predictions only

Length 757 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD248Q9HCU0 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC20.48■□□□□ 0.87
CD248Q9HCU0 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC20.48■□□□□ 0.87
CD248Q9HCU0 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC20.48■□□□□ 0.87
CD248Q9HCU0 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CD248Q9HCU0 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.48■□□□□ 0.87
CD248Q9HCU0 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC20.48■□□□□ 0.87
CD248Q9HCU0 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CD248Q9HCU0 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC20.48■□□□□ 0.87
CD248Q9HCU0 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC20.48■□□□□ 0.87
CD248Q9HCU0 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
CD248Q9HCU0 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
CD248Q9HCU0 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CD248Q9HCU0 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
CD248Q9HCU0 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.47■□□□□ 0.87
CD248Q9HCU0 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CD248Q9HCU0 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CD248Q9HCU0 LTB4R2-202ENST00000528054 3092 ntBASIC20.47■□□□□ 0.87
CD248Q9HCU0 AC005332.8-201ENST00000622750 2735 ntBASIC20.47■□□□□ 0.87
CD248Q9HCU0 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC20.47■□□□□ 0.87
CD248Q9HCU0 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC20.47■□□□□ 0.87
CD248Q9HCU0 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CD248Q9HCU0 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CD248Q9HCU0 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CD248Q9HCU0 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.47■□□□□ 0.87
CD248Q9HCU0 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
CD248Q9HCU0 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC20.47■□□□□ 0.87
CD248Q9HCU0 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
CD248Q9HCU0 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CD248Q9HCU0 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CD248Q9HCU0 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CD248Q9HCU0 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CD248Q9HCU0 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CD248Q9HCU0 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CD248Q9HCU0 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CD248Q9HCU0 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CD248Q9HCU0 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CD248Q9HCU0 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC20.46■□□□□ 0.87
CD248Q9HCU0 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC20.46■□□□□ 0.87
CD248Q9HCU0 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
CD248Q9HCU0 RER1-204ENST00000378518 522 ntTSL 3 BASIC20.46■□□□□ 0.87
CD248Q9HCU0 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CD248Q9HCU0 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CD248Q9HCU0 GXYLT1P3-201ENST00000453058 1193 ntBASIC20.46■□□□□ 0.87
CD248Q9HCU0 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC20.46■□□□□ 0.87
CD248Q9HCU0 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC20.46■□□□□ 0.87
CD248Q9HCU0 AC073912.3-201ENST00000624414 853 ntBASIC20.46■□□□□ 0.87
CD248Q9HCU0 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CD248Q9HCU0 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
CD248Q9HCU0 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC20.46■□□□□ 0.87
CD248Q9HCU0 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CD248Q9HCU0 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC20.46■□□□□ 0.87
CD248Q9HCU0 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC20.46■□□□□ 0.87
CD248Q9HCU0 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CD248Q9HCU0 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.46■□□□□ 0.87
CD248Q9HCU0 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.87
CD248Q9HCU0 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
CD248Q9HCU0 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CD248Q9HCU0 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CD248Q9HCU0 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
CD248Q9HCU0 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CD248Q9HCU0 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
CD248Q9HCU0 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CD248Q9HCU0 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CD248Q9HCU0 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CD248Q9HCU0 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CD248Q9HCU0 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CD248Q9HCU0 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
CD248Q9HCU0 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
CD248Q9HCU0 AC239809.2-201ENST00000415381 517 ntBASIC20.45■□□□□ 0.86
CD248Q9HCU0 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CD248Q9HCU0 HES2-206ENST00000489730 730 ntTSL 2 BASIC20.45■□□□□ 0.86
CD248Q9HCU0 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC20.45■□□□□ 0.86
CD248Q9HCU0 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC20.45■□□□□ 0.86
CD248Q9HCU0 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CD248Q9HCU0 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CD248Q9HCU0 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
CD248Q9HCU0 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC20.45■□□□□ 0.86
CD248Q9HCU0 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CD248Q9HCU0 AR-207ENST00000612010 3896 ntTSL 5 BASIC20.45■□□□□ 0.86
CD248Q9HCU0 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CD248Q9HCU0 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC20.45■□□□□ 0.86
CD248Q9HCU0 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CD248Q9HCU0 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CD248Q9HCU0 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CD248Q9HCU0 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
CD248Q9HCU0 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
CD248Q9HCU0 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CD248Q9HCU0 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC20.44■□□□□ 0.86
CD248Q9HCU0 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
CD248Q9HCU0 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
CD248Q9HCU0 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
CD248Q9HCU0 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CD248Q9HCU0 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC20.44■□□□□ 0.86
CD248Q9HCU0 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CD248Q9HCU0 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
CD248Q9HCU0 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CD248Q9HCU0 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC20.44■□□□□ 0.86
CD248Q9HCU0 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC20.44■□□□□ 0.86
CD248Q9HCU0 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC20.44■□□□□ 0.86
CD248Q9HCU0 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms