Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.02
PCIF1Q9H4Z3 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PCIF1Q9H4Z3 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
PCIF1Q9H4Z3 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PCIF1Q9H4Z3 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC21.39■■□□□ 1.01
PCIF1Q9H4Z3 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
PCIF1Q9H4Z3 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC21.39■■□□□ 1.01
PCIF1Q9H4Z3 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC21.39■■□□□ 1.01
PCIF1Q9H4Z3 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC21.39■■□□□ 1.01
PCIF1Q9H4Z3 TK2-204ENST00000525974 1178 ntTSL 2 BASIC21.39■■□□□ 1.01
PCIF1Q9H4Z3 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC21.39■■□□□ 1.01
PCIF1Q9H4Z3 AL359736.2-201ENST00000621992 437 ntBASIC21.39■■□□□ 1.01
PCIF1Q9H4Z3 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PCIF1Q9H4Z3 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
PCIF1Q9H4Z3 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
PCIF1Q9H4Z3 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC21.39■■□□□ 1.01
PCIF1Q9H4Z3 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PCIF1Q9H4Z3 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC21.39■■□□□ 1.01
PCIF1Q9H4Z3 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
PCIF1Q9H4Z3 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC21.39■■□□□ 1.01
PCIF1Q9H4Z3 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
PCIF1Q9H4Z3 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC21.39■■□□□ 1.01
PCIF1Q9H4Z3 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
PCIF1Q9H4Z3 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PCIF1Q9H4Z3 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC21.39■■□□□ 1.01
PCIF1Q9H4Z3 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC21.39■■□□□ 1.01
PCIF1Q9H4Z3 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PCIF1Q9H4Z3 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
PCIF1Q9H4Z3 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PCIF1Q9H4Z3 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
PCIF1Q9H4Z3 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PCIF1Q9H4Z3 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC21.38■■□□□ 1.01
PCIF1Q9H4Z3 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
PCIF1Q9H4Z3 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
PCIF1Q9H4Z3 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC21.38■■□□□ 1.01
PCIF1Q9H4Z3 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
PCIF1Q9H4Z3 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
PCIF1Q9H4Z3 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
PCIF1Q9H4Z3 AC142381.4-202ENST00000563973 229 ntBASIC21.38■■□□□ 1.01
PCIF1Q9H4Z3 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC21.38■■□□□ 1.01
PCIF1Q9H4Z3 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC21.38■■□□□ 1.01
PCIF1Q9H4Z3 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PCIF1Q9H4Z3 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
PCIF1Q9H4Z3 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
PCIF1Q9H4Z3 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
PCIF1Q9H4Z3 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC21.38■■□□□ 1.01
PCIF1Q9H4Z3 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC21.38■■□□□ 1.01
PCIF1Q9H4Z3 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PCIF1Q9H4Z3 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PCIF1Q9H4Z3 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
PCIF1Q9H4Z3 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
PCIF1Q9H4Z3 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PCIF1Q9H4Z3 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
PCIF1Q9H4Z3 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC21.37■■□□□ 1.01
PCIF1Q9H4Z3 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
PCIF1Q9H4Z3 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PCIF1Q9H4Z3 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC21.37■■□□□ 1.01
PCIF1Q9H4Z3 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PCIF1Q9H4Z3 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC21.37■■□□□ 1.01
PCIF1Q9H4Z3 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC21.37■■□□□ 1.01
PCIF1Q9H4Z3 AL158047.1-201ENST00000445918 881 ntBASIC21.37■■□□□ 1.01
PCIF1Q9H4Z3 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PCIF1Q9H4Z3 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC21.37■■□□□ 1.01
PCIF1Q9H4Z3 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC21.37■■□□□ 1.01
PCIF1Q9H4Z3 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC21.37■■□□□ 1.01
PCIF1Q9H4Z3 TMEM191A-211ENST00000637163 1067 ntBASIC21.37■■□□□ 1.01
PCIF1Q9H4Z3 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
PCIF1Q9H4Z3 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC21.37■■□□□ 1.01
PCIF1Q9H4Z3 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PCIF1Q9H4Z3 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC21.37■■□□□ 1.01
PCIF1Q9H4Z3 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PCIF1Q9H4Z3 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
PCIF1Q9H4Z3 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PCIF1Q9H4Z3 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
PCIF1Q9H4Z3 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
PCIF1Q9H4Z3 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PCIF1Q9H4Z3 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PCIF1Q9H4Z3 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC21.36■■□□□ 1.01
PCIF1Q9H4Z3 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PCIF1Q9H4Z3 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
PCIF1Q9H4Z3 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
PCIF1Q9H4Z3 KRT18P16-201ENST00000510337 1294 ntBASIC21.36■■□□□ 1.01
PCIF1Q9H4Z3 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC21.36■■□□□ 1.01
PCIF1Q9H4Z3 AC110285.5-201ENST00000611501 352 ntBASIC21.36■■□□□ 1.01
PCIF1Q9H4Z3 FAM197Y4-202ENST00000622692 608 ntBASIC21.36■■□□□ 1.01
PCIF1Q9H4Z3 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC21.36■■□□□ 1.01
PCIF1Q9H4Z3 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
PCIF1Q9H4Z3 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
PCIF1Q9H4Z3 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
PCIF1Q9H4Z3 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
PCIF1Q9H4Z3 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC21.36■■□□□ 1.01
PCIF1Q9H4Z3 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
PCIF1Q9H4Z3 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PCIF1Q9H4Z3 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC21.36■■□□□ 1.01
PCIF1Q9H4Z3 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
PCIF1Q9H4Z3 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
PCIF1Q9H4Z3 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
PCIF1Q9H4Z3 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
PCIF1Q9H4Z3 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC21.35■■□□□ 1.01
PCIF1Q9H4Z3 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC21.35■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms