Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC17.17■□□□□ 0.34
LIME1Q9H400 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LIME1Q9H400 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIME1Q9H400 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
LIME1Q9H400 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
LIME1Q9H400 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
LIME1Q9H400 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC17.16■□□□□ 0.34
LIME1Q9H400 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIME1Q9H400 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
LIME1Q9H400 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC17.16■□□□□ 0.34
LIME1Q9H400 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIME1Q9H400 AC073508.3-201ENST00000619697 1419 ntBASIC17.16■□□□□ 0.34
LIME1Q9H400 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIME1Q9H400 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
LIME1Q9H400 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC17.16■□□□□ 0.34
LIME1Q9H400 AP002982.1-201ENST00000492365 877 ntBASIC17.16■□□□□ 0.34
LIME1Q9H400 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC17.16■□□□□ 0.34
LIME1Q9H400 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC17.16■□□□□ 0.34
LIME1Q9H400 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC17.16■□□□□ 0.34
LIME1Q9H400 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC17.16■□□□□ 0.34
LIME1Q9H400 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC17.16■□□□□ 0.34
LIME1Q9H400 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIME1Q9H400 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
LIME1Q9H400 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIME1Q9H400 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC17.16■□□□□ 0.34
LIME1Q9H400 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC17.16■□□□□ 0.34
LIME1Q9H400 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIME1Q9H400 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
LIME1Q9H400 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
LIME1Q9H400 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC17.16■□□□□ 0.34
LIME1Q9H400 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LIME1Q9H400 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LIME1Q9H400 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LIME1Q9H400 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LIME1Q9H400 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
LIME1Q9H400 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LIME1Q9H400 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIME1Q9H400 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIME1Q9H400 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIME1Q9H400 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIME1Q9H400 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC17.15■□□□□ 0.34
LIME1Q9H400 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
LIME1Q9H400 DUX4L26-201ENST00000489078 1255 ntBASIC17.15■□□□□ 0.34
LIME1Q9H400 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC17.15■□□□□ 0.34
LIME1Q9H400 TMA16-209ENST00000513272 803 ntTSL 2 BASIC17.15■□□□□ 0.34
LIME1Q9H400 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LIME1Q9H400 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC17.15■□□□□ 0.34
LIME1Q9H400 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIME1Q9H400 CR392000.1-201ENST00000624770 1228 ntBASIC17.15■□□□□ 0.34
LIME1Q9H400 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC17.15■□□□□ 0.34
LIME1Q9H400 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LIME1Q9H400 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC17.15■□□□□ 0.34
LIME1Q9H400 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC17.15■□□□□ 0.34
LIME1Q9H400 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC17.15■□□□□ 0.34
LIME1Q9H400 KRT18P22-201ENST00000402024 1347 ntBASIC17.15■□□□□ 0.34
LIME1Q9H400 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
LIME1Q9H400 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
LIME1Q9H400 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIME1Q9H400 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIME1Q9H400 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIME1Q9H400 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC17.14■□□□□ 0.33
LIME1Q9H400 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIME1Q9H400 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC17.14■□□□□ 0.33
LIME1Q9H400 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC17.14■□□□□ 0.33
LIME1Q9H400 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIME1Q9H400 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LIME1Q9H400 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIME1Q9H400 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC17.14■□□□□ 0.33
LIME1Q9H400 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC17.14■□□□□ 0.33
LIME1Q9H400 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIME1Q9H400 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIME1Q9H400 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIME1Q9H400 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIME1Q9H400 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC17.14■□□□□ 0.33
LIME1Q9H400 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIME1Q9H400 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LIME1Q9H400 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC17.14■□□□□ 0.33
LIME1Q9H400 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIME1Q9H400 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
LIME1Q9H400 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
LIME1Q9H400 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
LIME1Q9H400 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC17.13■□□□□ 0.33
LIME1Q9H400 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LIME1Q9H400 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIME1Q9H400 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIME1Q9H400 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC17.13■□□□□ 0.33
LIME1Q9H400 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIME1Q9H400 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIME1Q9H400 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
LIME1Q9H400 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LIME1Q9H400 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC17.13■□□□□ 0.33
LIME1Q9H400 SLC25A3P1-201ENST00000443844 931 ntBASIC17.13■□□□□ 0.33
LIME1Q9H400 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC17.13■□□□□ 0.33
LIME1Q9H400 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC17.13■□□□□ 0.33
LIME1Q9H400 AC087388.1-201ENST00000571370 1112 ntBASIC17.13■□□□□ 0.33
LIME1Q9H400 WDR88-203ENST00000592765 651 ntTSL 5 BASIC17.13■□□□□ 0.33
LIME1Q9H400 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
LIME1Q9H400 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
LIME1Q9H400 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
LIME1Q9H400 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms