Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC20.03■□□□□ 0.8
SKA1Q96BD8 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SKA1Q96BD8 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SKA1Q96BD8 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
SKA1Q96BD8 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SKA1Q96BD8 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC20.03■□□□□ 0.8
SKA1Q96BD8 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC20.03■□□□□ 0.8
SKA1Q96BD8 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC20.03■□□□□ 0.8
SKA1Q96BD8 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
SKA1Q96BD8 MIR4785-201ENST00000585005 73 ntBASIC20.03■□□□□ 0.8
SKA1Q96BD8 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SKA1Q96BD8 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SKA1Q96BD8 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC20.03■□□□□ 0.8
SKA1Q96BD8 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
SKA1Q96BD8 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
SKA1Q96BD8 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SKA1Q96BD8 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.02■□□□□ 0.8
SKA1Q96BD8 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
SKA1Q96BD8 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SKA1Q96BD8 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SKA1Q96BD8 SERF2-207ENST00000409614 582 ntTSL 2 BASIC20.02■□□□□ 0.8
SKA1Q96BD8 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC20.02■□□□□ 0.8
SKA1Q96BD8 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SKA1Q96BD8 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SKA1Q96BD8 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SKA1Q96BD8 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC20.02■□□□□ 0.8
SKA1Q96BD8 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SKA1Q96BD8 LINC01023-201ENST00000606054 436 ntBASIC20.02■□□□□ 0.8
SKA1Q96BD8 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
SKA1Q96BD8 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SKA1Q96BD8 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
SKA1Q96BD8 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SKA1Q96BD8 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
SKA1Q96BD8 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC20.02■□□□□ 0.8
SKA1Q96BD8 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC20.02■□□□□ 0.8
SKA1Q96BD8 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
SKA1Q96BD8 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC20.02■□□□□ 0.79
SKA1Q96BD8 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SKA1Q96BD8 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SKA1Q96BD8 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SKA1Q96BD8 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.79
SKA1Q96BD8 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SKA1Q96BD8 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SKA1Q96BD8 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SKA1Q96BD8 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC20.01■□□□□ 0.79
SKA1Q96BD8 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SKA1Q96BD8 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SKA1Q96BD8 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
SKA1Q96BD8 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SKA1Q96BD8 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC20.01■□□□□ 0.79
SKA1Q96BD8 RARRES2P10-201ENST00000564312 460 ntBASIC20.01■□□□□ 0.79
SKA1Q96BD8 AL049637.2-201ENST00000641778 930 ntBASIC20.01■□□□□ 0.79
SKA1Q96BD8 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SKA1Q96BD8 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SKA1Q96BD8 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SKA1Q96BD8 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
SKA1Q96BD8 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SKA1Q96BD8 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC20.01■□□□□ 0.79
SKA1Q96BD8 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SKA1Q96BD8 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SKA1Q96BD8 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SKA1Q96BD8 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
SKA1Q96BD8 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
SKA1Q96BD8 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC20■□□□□ 0.79
SKA1Q96BD8 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC20■□□□□ 0.79
SKA1Q96BD8 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC20■□□□□ 0.79
SKA1Q96BD8 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
SKA1Q96BD8 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
SKA1Q96BD8 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
SKA1Q96BD8 LBX2-AS1-202ENST00000603175 2083 ntBASIC20■□□□□ 0.79
SKA1Q96BD8 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
SKA1Q96BD8 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC20■□□□□ 0.79
SKA1Q96BD8 DHDH-203ENST00000522614 776 ntTSL 5 BASIC20■□□□□ 0.79
SKA1Q96BD8 MAX-217ENST00000557277 728 ntTSL 3 BASIC20■□□□□ 0.79
SKA1Q96BD8 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC20■□□□□ 0.79
SKA1Q96BD8 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SKA1Q96BD8 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC20■□□□□ 0.79
SKA1Q96BD8 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC20■□□□□ 0.79
SKA1Q96BD8 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC20■□□□□ 0.79
SKA1Q96BD8 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20■□□□□ 0.79
SKA1Q96BD8 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC20■□□□□ 0.79
SKA1Q96BD8 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC20■□□□□ 0.79
SKA1Q96BD8 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC20■□□□□ 0.79
SKA1Q96BD8 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SKA1Q96BD8 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
SKA1Q96BD8 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
SKA1Q96BD8 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SKA1Q96BD8 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.99■□□□□ 0.79
SKA1Q96BD8 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
SKA1Q96BD8 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SKA1Q96BD8 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SKA1Q96BD8 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC19.99■□□□□ 0.79
SKA1Q96BD8 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC19.99■□□□□ 0.79
SKA1Q96BD8 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SKA1Q96BD8 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
SKA1Q96BD8 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
SKA1Q96BD8 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SKA1Q96BD8 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SKA1Q96BD8 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
SKA1Q96BD8 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms