Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CLRN3Q8NCR9 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC15.6■□□□□ 0.09
CLRN3Q8NCR9 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
CLRN3Q8NCR9 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
CLRN3Q8NCR9 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
CLRN3Q8NCR9 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CLRN3Q8NCR9 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC15.6■□□□□ 0.09
CLRN3Q8NCR9 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CLRN3Q8NCR9 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC15.6■□□□□ 0.09
CLRN3Q8NCR9 ATP5G2P3-201ENST00000429083 425 ntBASIC15.6■□□□□ 0.09
CLRN3Q8NCR9 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC15.6■□□□□ 0.09
CLRN3Q8NCR9 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CLRN3Q8NCR9 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
CLRN3Q8NCR9 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CLRN3Q8NCR9 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
CLRN3Q8NCR9 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CLRN3Q8NCR9 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CLRN3Q8NCR9 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CLRN3Q8NCR9 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CLRN3Q8NCR9 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC15.6■□□□□ 0.09
CLRN3Q8NCR9 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC15.6■□□□□ 0.09
CLRN3Q8NCR9 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
CLRN3Q8NCR9 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CLRN3Q8NCR9 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
CLRN3Q8NCR9 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
CLRN3Q8NCR9 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CLRN3Q8NCR9 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CLRN3Q8NCR9 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
CLRN3Q8NCR9 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CLRN3Q8NCR9 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
CLRN3Q8NCR9 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CLRN3Q8NCR9 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC15.59■□□□□ 0.09
CLRN3Q8NCR9 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
CLRN3Q8NCR9 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CLRN3Q8NCR9 MTX2-204ENST00000443241 799 ntTSL 3 BASIC15.59■□□□□ 0.09
CLRN3Q8NCR9 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CLRN3Q8NCR9 BHLHE23-202ENST00000612929 1109 ntBASIC15.59■□□□□ 0.09
CLRN3Q8NCR9 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
CLRN3Q8NCR9 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CLRN3Q8NCR9 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CLRN3Q8NCR9 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC15.59■□□□□ 0.09
CLRN3Q8NCR9 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC15.59■□□□□ 0.09
CLRN3Q8NCR9 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CLRN3Q8NCR9 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CLRN3Q8NCR9 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
CLRN3Q8NCR9 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
CLRN3Q8NCR9 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CLRN3Q8NCR9 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CLRN3Q8NCR9 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC15.58■□□□□ 0.09
CLRN3Q8NCR9 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.09
CLRN3Q8NCR9 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.09
CLRN3Q8NCR9 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
CLRN3Q8NCR9 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
CLRN3Q8NCR9 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.09
CLRN3Q8NCR9 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CLRN3Q8NCR9 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CLRN3Q8NCR9 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CLRN3Q8NCR9 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CLRN3Q8NCR9 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC15.58■□□□□ 0.08
CLRN3Q8NCR9 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CLRN3Q8NCR9 AC004987.1-201ENST00000428627 508 ntBASIC15.58■□□□□ 0.08
CLRN3Q8NCR9 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC15.58■□□□□ 0.08
CLRN3Q8NCR9 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC15.58■□□□□ 0.08
CLRN3Q8NCR9 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC15.58■□□□□ 0.08
CLRN3Q8NCR9 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
CLRN3Q8NCR9 AC019171.1-201ENST00000601251 1056 ntBASIC15.58■□□□□ 0.08
CLRN3Q8NCR9 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CLRN3Q8NCR9 NKILA-201ENST00000613231 537 ntTSL 4 BASIC15.58■□□□□ 0.08
CLRN3Q8NCR9 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
CLRN3Q8NCR9 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CLRN3Q8NCR9 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
CLRN3Q8NCR9 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CLRN3Q8NCR9 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
CLRN3Q8NCR9 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
CLRN3Q8NCR9 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC15.58■□□□□ 0.08
CLRN3Q8NCR9 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
CLRN3Q8NCR9 LINC00896-202ENST00000609602 2128 ntBASIC15.58■□□□□ 0.08
CLRN3Q8NCR9 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CLRN3Q8NCR9 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC15.58■□□□□ 0.08
CLRN3Q8NCR9 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CLRN3Q8NCR9 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLRN3Q8NCR9 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
CLRN3Q8NCR9 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLRN3Q8NCR9 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLRN3Q8NCR9 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLRN3Q8NCR9 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
CLRN3Q8NCR9 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLRN3Q8NCR9 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLRN3Q8NCR9 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLRN3Q8NCR9 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
CLRN3Q8NCR9 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
CLRN3Q8NCR9 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLRN3Q8NCR9 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLRN3Q8NCR9 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC15.57■□□□□ 0.08
CLRN3Q8NCR9 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
CLRN3Q8NCR9 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC15.57■□□□□ 0.08
CLRN3Q8NCR9 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLRN3Q8NCR9 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLRN3Q8NCR9 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLRN3Q8NCR9 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms