Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PPP4R4Q6NUP7 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC18.7■□□□□ 0.58
PPP4R4Q6NUP7 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
PPP4R4Q6NUP7 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.69■□□□□ 0.58
PPP4R4Q6NUP7 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PPP4R4Q6NUP7 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
PPP4R4Q6NUP7 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PPP4R4Q6NUP7 LINC01465-201ENST00000408887 1940 ntBASIC18.69■□□□□ 0.58
PPP4R4Q6NUP7 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
PPP4R4Q6NUP7 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
PPP4R4Q6NUP7 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC18.69■□□□□ 0.58
PPP4R4Q6NUP7 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
PPP4R4Q6NUP7 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC18.69■□□□□ 0.58
PPP4R4Q6NUP7 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PPP4R4Q6NUP7 CD37-204ENST00000535669 1674 ntTSL 2 BASIC18.69■□□□□ 0.58
PPP4R4Q6NUP7 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
PPP4R4Q6NUP7 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PPP4R4Q6NUP7 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
PPP4R4Q6NUP7 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC18.69■□□□□ 0.58
PPP4R4Q6NUP7 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
PPP4R4Q6NUP7 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
PPP4R4Q6NUP7 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
PPP4R4Q6NUP7 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18.69■□□□□ 0.58
PPP4R4Q6NUP7 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
PPP4R4Q6NUP7 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC18.68■□□□□ 0.58
PPP4R4Q6NUP7 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC18.68■□□□□ 0.58
PPP4R4Q6NUP7 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PPP4R4Q6NUP7 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PPP4R4Q6NUP7 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
PPP4R4Q6NUP7 AC007613.1-201ENST00000572811 2597 ntBASIC18.68■□□□□ 0.58
PPP4R4Q6NUP7 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
PPP4R4Q6NUP7 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
PPP4R4Q6NUP7 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
PPP4R4Q6NUP7 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PPP4R4Q6NUP7 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PPP4R4Q6NUP7 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PPP4R4Q6NUP7 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC18.68■□□□□ 0.58
PPP4R4Q6NUP7 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
PPP4R4Q6NUP7 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
PPP4R4Q6NUP7 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PPP4R4Q6NUP7 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PPP4R4Q6NUP7 AL049812.1-201ENST00000432563 2267 ntBASIC18.68■□□□□ 0.58
PPP4R4Q6NUP7 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PPP4R4Q6NUP7 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PPP4R4Q6NUP7 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PPP4R4Q6NUP7 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PPP4R4Q6NUP7 STK25-205ENST00000405883 1904 ntTSL 2 BASIC18.68■□□□□ 0.58
PPP4R4Q6NUP7 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PPP4R4Q6NUP7 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC18.68■□□□□ 0.58
PPP4R4Q6NUP7 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
PPP4R4Q6NUP7 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC18.68■□□□□ 0.58
PPP4R4Q6NUP7 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PPP4R4Q6NUP7 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
PPP4R4Q6NUP7 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PPP4R4Q6NUP7 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC18.67■□□□□ 0.58
PPP4R4Q6NUP7 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
PPP4R4Q6NUP7 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PPP4R4Q6NUP7 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PPP4R4Q6NUP7 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
PPP4R4Q6NUP7 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PPP4R4Q6NUP7 DPP3P2-201ENST00000416030 1696 ntBASIC18.67■□□□□ 0.58
PPP4R4Q6NUP7 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PPP4R4Q6NUP7 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC18.67■□□□□ 0.58
PPP4R4Q6NUP7 CROCCP5-201ENST00000436658 830 ntBASIC18.67■□□□□ 0.58
PPP4R4Q6NUP7 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC18.67■□□□□ 0.58
PPP4R4Q6NUP7 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC18.67■□□□□ 0.58
PPP4R4Q6NUP7 SLC7A5P1-201ENST00000568957 537 ntBASIC18.67■□□□□ 0.58
PPP4R4Q6NUP7 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC18.67■□□□□ 0.58
PPP4R4Q6NUP7 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
PPP4R4Q6NUP7 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PPP4R4Q6NUP7 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PPP4R4Q6NUP7 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
PPP4R4Q6NUP7 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
PPP4R4Q6NUP7 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
PPP4R4Q6NUP7 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
PPP4R4Q6NUP7 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PPP4R4Q6NUP7 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PPP4R4Q6NUP7 PPP1R14BP3-201ENST00000509033 445 ntBASIC18.66■□□□□ 0.58
PPP4R4Q6NUP7 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC18.66■□□□□ 0.58
PPP4R4Q6NUP7 AC008694.1-202ENST00000636953 945 ntBASIC18.66■□□□□ 0.58
PPP4R4Q6NUP7 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC18.66■□□□□ 0.58
PPP4R4Q6NUP7 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC18.66■□□□□ 0.58
PPP4R4Q6NUP7 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PPP4R4Q6NUP7 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
PPP4R4Q6NUP7 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PPP4R4Q6NUP7 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
PPP4R4Q6NUP7 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PPP4R4Q6NUP7 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PPP4R4Q6NUP7 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PPP4R4Q6NUP7 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
PPP4R4Q6NUP7 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PPP4R4Q6NUP7 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
PPP4R4Q6NUP7 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
PPP4R4Q6NUP7 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
PPP4R4Q6NUP7 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
PPP4R4Q6NUP7 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PPP4R4Q6NUP7 AL032819.2-201ENST00000624543 2162 ntBASIC18.65■□□□□ 0.58
PPP4R4Q6NUP7 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PPP4R4Q6NUP7 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PPP4R4Q6NUP7 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms