Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC14.05□□□□□ -0.16
COL7A1Q02388 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC14.05□□□□□ -0.16
COL7A1Q02388 AL136038.3-201ENST00000561909 1096 ntBASIC14.05□□□□□ -0.16
COL7A1Q02388 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC14.05□□□□□ -0.16
COL7A1Q02388 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL7A1Q02388 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL7A1Q02388 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL7A1Q02388 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL7A1Q02388 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
COL7A1Q02388 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
COL7A1Q02388 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC14.05□□□□□ -0.16
COL7A1Q02388 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC14.05□□□□□ -0.16
COL7A1Q02388 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC14.05□□□□□ -0.16
COL7A1Q02388 CA15P1-201ENST00000481698 905 ntBASIC14.05□□□□□ -0.16
COL7A1Q02388 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL7A1Q02388 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC14.05□□□□□ -0.16
COL7A1Q02388 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC14.05□□□□□ -0.16
COL7A1Q02388 TBCB-205ENST00000585746 875 ntTSL 3 BASIC14.05□□□□□ -0.16
COL7A1Q02388 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
COL7A1Q02388 LINC01311-201ENST00000565162 1445 ntBASIC14.05□□□□□ -0.16
COL7A1Q02388 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC14.05□□□□□ -0.16
COL7A1Q02388 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL7A1Q02388 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
COL7A1Q02388 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
COL7A1Q02388 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC14.04□□□□□ -0.16
COL7A1Q02388 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC14.04□□□□□ -0.16
COL7A1Q02388 AC116351.2-201ENST00000606540 1585 ntBASIC14.04□□□□□ -0.16
COL7A1Q02388 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
COL7A1Q02388 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL7A1Q02388 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL7A1Q02388 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL7A1Q02388 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC14.04□□□□□ -0.16
COL7A1Q02388 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
COL7A1Q02388 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL7A1Q02388 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL7A1Q02388 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL7A1Q02388 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC14.04□□□□□ -0.16
COL7A1Q02388 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC14.04□□□□□ -0.16
COL7A1Q02388 FAAHP1-202ENST00000446499 1238 ntBASIC14.04□□□□□ -0.16
COL7A1Q02388 AP002469.2-201ENST00000531724 424 ntBASIC14.04□□□□□ -0.16
COL7A1Q02388 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
COL7A1Q02388 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
COL7A1Q02388 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL7A1Q02388 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
COL7A1Q02388 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
COL7A1Q02388 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC14.04□□□□□ -0.16
COL7A1Q02388 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
COL7A1Q02388 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC14.04□□□□□ -0.16
COL7A1Q02388 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
COL7A1Q02388 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL7A1Q02388 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
COL7A1Q02388 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
COL7A1Q02388 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL7A1Q02388 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL7A1Q02388 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
COL7A1Q02388 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC14.03□□□□□ -0.16
COL7A1Q02388 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC14.03□□□□□ -0.16
COL7A1Q02388 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
COL7A1Q02388 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC14.03□□□□□ -0.16
COL7A1Q02388 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
COL7A1Q02388 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
COL7A1Q02388 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC14.03□□□□□ -0.16
COL7A1Q02388 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
COL7A1Q02388 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
COL7A1Q02388 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL7A1Q02388 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL7A1Q02388 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL7A1Q02388 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL7A1Q02388 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC14.03□□□□□ -0.16
COL7A1Q02388 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC14.03□□□□□ -0.16
COL7A1Q02388 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC14.03□□□□□ -0.16
COL7A1Q02388 AC112907.2-201ENST00000448639 330 ntBASIC14.03□□□□□ -0.16
COL7A1Q02388 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL7A1Q02388 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL7A1Q02388 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL7A1Q02388 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL7A1Q02388 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC14.02□□□□□ -0.16
COL7A1Q02388 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC14.02□□□□□ -0.16
COL7A1Q02388 AC092597.1-201ENST00000487352 616 ntBASIC14.02□□□□□ -0.16
COL7A1Q02388 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
COL7A1Q02388 AC012615.1-201ENST00000565797 1299 ntBASIC14.02□□□□□ -0.16
COL7A1Q02388 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
COL7A1Q02388 HLA-A-209ENST00000638375 975 ntBASIC14.02□□□□□ -0.16
COL7A1Q02388 AF106564.1-201ENST00000607058 2553 ntBASIC14.02□□□□□ -0.16
COL7A1Q02388 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC14.02□□□□□ -0.16
COL7A1Q02388 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC14.02□□□□□ -0.16
COL7A1Q02388 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL7A1Q02388 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC14.02□□□□□ -0.17
COL7A1Q02388 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC14.02□□□□□ -0.17
COL7A1Q02388 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL7A1Q02388 DERL1-203ENST00000419562 918 ntTSL 2 BASIC14.02□□□□□ -0.17
COL7A1Q02388 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
COL7A1Q02388 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
COL7A1Q02388 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
COL7A1Q02388 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC14.02□□□□□ -0.17
COL7A1Q02388 PRELID1P1-202ENST00000567272 903 ntBASIC14.02□□□□□ -0.17
COL7A1Q02388 ECEL1P1-201ENST00000373592 1742 ntBASIC14.02□□□□□ -0.17
COL7A1Q02388 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC14.02□□□□□ -0.17
COL7A1Q02388 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
COL7A1Q02388 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms