Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
H3F3AP84243 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
H3F3AP84243 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
H3F3AP84243 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
H3F3AP84243 KRASP1-201ENST00000407852 552 ntBASIC17.5■□□□□ 0.39
H3F3AP84243 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
H3F3AP84243 RPPH1-201ENST00000516869 333 ntBASIC17.5■□□□□ 0.39
H3F3AP84243 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC17.5■□□□□ 0.39
H3F3AP84243 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
H3F3AP84243 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
H3F3AP84243 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC17.5■□□□□ 0.39
H3F3AP84243 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
H3F3AP84243 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
H3F3AP84243 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
H3F3AP84243 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
H3F3AP84243 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
H3F3AP84243 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
H3F3AP84243 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
H3F3AP84243 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
H3F3AP84243 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
H3F3AP84243 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC17.49■□□□□ 0.39
H3F3AP84243 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
H3F3AP84243 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
H3F3AP84243 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC17.49■□□□□ 0.39
H3F3AP84243 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
H3F3AP84243 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
H3F3AP84243 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC17.49■□□□□ 0.39
H3F3AP84243 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC17.49■□□□□ 0.39
H3F3AP84243 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC17.49■□□□□ 0.39
H3F3AP84243 NME1-207ENST00000480143 964 ntTSL 2 BASIC17.49■□□□□ 0.39
H3F3AP84243 C1QBPP2-201ENST00000528754 825 ntBASIC17.49■□□□□ 0.39
H3F3AP84243 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
H3F3AP84243 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC17.49■□□□□ 0.39
H3F3AP84243 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC17.49■□□□□ 0.39
H3F3AP84243 AC110285.5-201ENST00000611501 352 ntBASIC17.49■□□□□ 0.39
H3F3AP84243 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC17.49■□□□□ 0.39
H3F3AP84243 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
H3F3AP84243 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC17.49■□□□□ 0.39
H3F3AP84243 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
H3F3AP84243 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC17.49■□□□□ 0.39
H3F3AP84243 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC17.49■□□□□ 0.39
H3F3AP84243 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
H3F3AP84243 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
H3F3AP84243 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
H3F3AP84243 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
H3F3AP84243 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
H3F3AP84243 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
H3F3AP84243 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC17.48■□□□□ 0.39
H3F3AP84243 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
H3F3AP84243 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC17.48■□□□□ 0.39
H3F3AP84243 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC17.48■□□□□ 0.39
H3F3AP84243 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC17.48■□□□□ 0.39
H3F3AP84243 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
H3F3AP84243 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
H3F3AP84243 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
H3F3AP84243 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
H3F3AP84243 KRT16P5-201ENST00000455284 522 ntBASIC17.48■□□□□ 0.39
H3F3AP84243 AC098590.1-201ENST00000468126 897 ntBASIC17.48■□□□□ 0.39
H3F3AP84243 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC17.48■□□□□ 0.39
H3F3AP84243 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC17.48■□□□□ 0.39
H3F3AP84243 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC17.48■□□□□ 0.39
H3F3AP84243 AC004264.1-201ENST00000608354 794 ntBASIC17.48■□□□□ 0.39
H3F3AP84243 AL359736.2-201ENST00000621992 437 ntBASIC17.48■□□□□ 0.39
H3F3AP84243 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
H3F3AP84243 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
H3F3AP84243 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC17.48■□□□□ 0.39
H3F3AP84243 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
H3F3AP84243 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
H3F3AP84243 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
H3F3AP84243 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
H3F3AP84243 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
H3F3AP84243 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
H3F3AP84243 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC17.47■□□□□ 0.39
H3F3AP84243 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
H3F3AP84243 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC17.47■□□□□ 0.39
H3F3AP84243 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
H3F3AP84243 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
H3F3AP84243 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
H3F3AP84243 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
H3F3AP84243 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
H3F3AP84243 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
H3F3AP84243 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
H3F3AP84243 TUBB8P6-201ENST00000436895 1288 ntBASIC17.47■□□□□ 0.39
H3F3AP84243 GCSHP5-201ENST00000443090 522 ntBASIC17.47■□□□□ 0.39
H3F3AP84243 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
H3F3AP84243 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC17.47■□□□□ 0.39
H3F3AP84243 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
H3F3AP84243 TMEM191A-211ENST00000637163 1067 ntBASIC17.47■□□□□ 0.39
H3F3AP84243 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
H3F3AP84243 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
H3F3AP84243 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
H3F3AP84243 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC17.47■□□□□ 0.39
H3F3AP84243 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
H3F3AP84243 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC17.47■□□□□ 0.39
H3F3AP84243 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
H3F3AP84243 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
H3F3AP84243 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
H3F3AP84243 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
H3F3AP84243 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
H3F3AP84243 KRT8P8-201ENST00000434750 1448 ntBASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 14 ms