Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
H3F3AP84243 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
H3F3AP84243 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
H3F3AP84243 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
H3F3AP84243 KRASP1-201ENST00000407852 552 ntBASIC17.5■□□□□ 0.39
H3F3AP84243 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
H3F3AP84243 RPPH1-201ENST00000516869 333 ntBASIC17.5■□□□□ 0.39
H3F3AP84243 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC17.5■□□□□ 0.39
H3F3AP84243 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
H3F3AP84243 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
H3F3AP84243 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC17.5■□□□□ 0.39
H3F3AP84243 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
H3F3AP84243 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
H3F3AP84243 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
H3F3AP84243 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
H3F3AP84243 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
H3F3AP84243 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
H3F3AP84243 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
H3F3AP84243 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
H3F3AP84243 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
H3F3AP84243 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC17.49■□□□□ 0.39
H3F3AP84243 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
H3F3AP84243 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
H3F3AP84243 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC17.49■□□□□ 0.39
H3F3AP84243 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
H3F3AP84243 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
H3F3AP84243 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC17.49■□□□□ 0.39
H3F3AP84243 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC17.49■□□□□ 0.39
H3F3AP84243 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC17.49■□□□□ 0.39
H3F3AP84243 NME1-207ENST00000480143 964 ntTSL 2 BASIC17.49■□□□□ 0.39
H3F3AP84243 C1QBPP2-201ENST00000528754 825 ntBASIC17.49■□□□□ 0.39
H3F3AP84243 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
H3F3AP84243 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC17.49■□□□□ 0.39
H3F3AP84243 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC17.49■□□□□ 0.39
H3F3AP84243 AC110285.5-201ENST00000611501 352 ntBASIC17.49■□□□□ 0.39
H3F3AP84243 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC17.49■□□□□ 0.39
H3F3AP84243 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
H3F3AP84243 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC17.49■□□□□ 0.39
H3F3AP84243 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
H3F3AP84243 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC17.49■□□□□ 0.39
H3F3AP84243 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC17.49■□□□□ 0.39
H3F3AP84243 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
H3F3AP84243 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
H3F3AP84243 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
H3F3AP84243 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
H3F3AP84243 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
H3F3AP84243 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
H3F3AP84243 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC17.48■□□□□ 0.39
H3F3AP84243 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
H3F3AP84243 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC17.48■□□□□ 0.39
H3F3AP84243 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC17.48■□□□□ 0.39
H3F3AP84243 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC17.48■□□□□ 0.39
H3F3AP84243 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
H3F3AP84243 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
H3F3AP84243 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
H3F3AP84243 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
H3F3AP84243 KRT16P5-201ENST00000455284 522 ntBASIC17.48■□□□□ 0.39
H3F3AP84243 AC098590.1-201ENST00000468126 897 ntBASIC17.48■□□□□ 0.39
H3F3AP84243 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC17.48■□□□□ 0.39
H3F3AP84243 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC17.48■□□□□ 0.39
H3F3AP84243 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC17.48■□□□□ 0.39
H3F3AP84243 AC004264.1-201ENST00000608354 794 ntBASIC17.48■□□□□ 0.39
H3F3AP84243 AL359736.2-201ENST00000621992 437 ntBASIC17.48■□□□□ 0.39
H3F3AP84243 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
H3F3AP84243 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
H3F3AP84243 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC17.48■□□□□ 0.39
H3F3AP84243 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
H3F3AP84243 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
H3F3AP84243 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
H3F3AP84243 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
H3F3AP84243 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
H3F3AP84243 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
H3F3AP84243 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC17.47■□□□□ 0.39
H3F3AP84243 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
H3F3AP84243 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC17.47■□□□□ 0.39
H3F3AP84243 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
H3F3AP84243 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
H3F3AP84243 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
H3F3AP84243 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
H3F3AP84243 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
H3F3AP84243 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
H3F3AP84243 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
H3F3AP84243 TUBB8P6-201ENST00000436895 1288 ntBASIC17.47■□□□□ 0.39
H3F3AP84243 GCSHP5-201ENST00000443090 522 ntBASIC17.47■□□□□ 0.39
H3F3AP84243 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
H3F3AP84243 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC17.47■□□□□ 0.39
H3F3AP84243 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
H3F3AP84243 TMEM191A-211ENST00000637163 1067 ntBASIC17.47■□□□□ 0.39
H3F3AP84243 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
H3F3AP84243 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
H3F3AP84243 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
H3F3AP84243 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC17.47■□□□□ 0.39
H3F3AP84243 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
H3F3AP84243 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC17.47■□□□□ 0.39
H3F3AP84243 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
H3F3AP84243 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
H3F3AP84243 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
H3F3AP84243 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
H3F3AP84243 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
H3F3AP84243 KRT8P8-201ENST00000434750 1448 ntBASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms