Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC18.56■□□□□ 0.56
LIM2P55344 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LIM2P55344 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LIM2P55344 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LIM2P55344 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC18.56■□□□□ 0.56
LIM2P55344 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
LIM2P55344 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIM2P55344 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIM2P55344 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
LIM2P55344 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIM2P55344 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC18.55■□□□□ 0.56
LIM2P55344 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC18.55■□□□□ 0.56
LIM2P55344 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC18.55■□□□□ 0.56
LIM2P55344 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIM2P55344 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIM2P55344 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC18.55■□□□□ 0.56
LIM2P55344 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC18.55■□□□□ 0.56
LIM2P55344 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
LIM2P55344 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIM2P55344 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC18.55■□□□□ 0.56
LIM2P55344 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
LIM2P55344 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
LIM2P55344 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIM2P55344 GOLGA6L3-201ENST00000507199 1679 ntBASIC18.55■□□□□ 0.56
LIM2P55344 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC18.55■□□□□ 0.56
LIM2P55344 PRORSD1P-201ENST00000295112 541 ntBASIC18.55■□□□□ 0.56
LIM2P55344 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
LIM2P55344 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIM2P55344 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC18.55■□□□□ 0.56
LIM2P55344 AC239809.2-201ENST00000415381 517 ntBASIC18.55■□□□□ 0.56
LIM2P55344 YBX1P10-201ENST00000444752 975 ntBASIC18.55■□□□□ 0.56
LIM2P55344 LY6E-205ENST00000519611 635 ntTSL 3 BASIC18.55■□□□□ 0.56
LIM2P55344 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC18.55■□□□□ 0.56
LIM2P55344 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC18.55■□□□□ 0.56
LIM2P55344 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIM2P55344 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC18.55■□□□□ 0.56
LIM2P55344 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIM2P55344 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIM2P55344 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC18.55■□□□□ 0.56
LIM2P55344 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
LIM2P55344 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC18.55■□□□□ 0.56
LIM2P55344 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
LIM2P55344 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIM2P55344 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
LIM2P55344 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIM2P55344 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIM2P55344 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
LIM2P55344 NBPF21P-201ENST00000425093 1451 ntBASIC18.54■□□□□ 0.56
LIM2P55344 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
LIM2P55344 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
LIM2P55344 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC18.54■□□□□ 0.56
LIM2P55344 KRASP1-201ENST00000407852 552 ntBASIC18.54■□□□□ 0.56
LIM2P55344 SERF2-207ENST00000409614 582 ntTSL 2 BASIC18.54■□□□□ 0.56
LIM2P55344 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC18.54■□□□□ 0.56
LIM2P55344 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC18.54■□□□□ 0.56
LIM2P55344 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LIM2P55344 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC18.54■□□□□ 0.56
LIM2P55344 F2R-202ENST00000505600 442 ntTSL 2 BASIC18.54■□□□□ 0.56
LIM2P55344 C1QBPP2-201ENST00000528754 825 ntBASIC18.54■□□□□ 0.56
LIM2P55344 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LIM2P55344 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
LIM2P55344 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LIM2P55344 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LIM2P55344 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
LIM2P55344 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LIM2P55344 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC18.54■□□□□ 0.56
LIM2P55344 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC18.53■□□□□ 0.56
LIM2P55344 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LIM2P55344 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC18.53■□□□□ 0.56
LIM2P55344 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
LIM2P55344 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LIM2P55344 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LIM2P55344 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
LIM2P55344 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LIM2P55344 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
LIM2P55344 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LIM2P55344 ISG20-202ENST00000379224 540 ntTSL 3 BASIC18.53■□□□□ 0.56
LIM2P55344 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
LIM2P55344 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
LIM2P55344 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
LIM2P55344 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC18.53■□□□□ 0.56
LIM2P55344 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC18.53■□□□□ 0.56
LIM2P55344 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC18.53■□□□□ 0.56
LIM2P55344 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC18.53■□□□□ 0.56
LIM2P55344 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
LIM2P55344 AC124016.1-201ENST00000609552 612 ntBASIC18.53■□□□□ 0.56
LIM2P55344 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC18.53■□□□□ 0.56
LIM2P55344 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
LIM2P55344 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
LIM2P55344 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LIM2P55344 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LIM2P55344 RNF165-205ENST00000588679 2904 ntBASIC18.53■□□□□ 0.56
LIM2P55344 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
LIM2P55344 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LIM2P55344 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.52■□□□□ 0.56
LIM2P55344 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LIM2P55344 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LIM2P55344 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.52■□□□□ 0.56
LIM2P55344 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LIM2P55344 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms