Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA3P55318 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA3P55318 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC14.66□□□□□ -0.06
FOXA3P55318 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA3P55318 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA3P55318 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA3P55318 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA3P55318 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA3P55318 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA3P55318 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
FOXA3P55318 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA3P55318 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC14.66□□□□□ -0.06
FOXA3P55318 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA3P55318 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA3P55318 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA3P55318 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
FOXA3P55318 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
FOXA3P55318 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
FOXA3P55318 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC14.66□□□□□ -0.06
FOXA3P55318 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC14.66□□□□□ -0.06
FOXA3P55318 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC14.66□□□□□ -0.06
FOXA3P55318 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA3P55318 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA3P55318 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA3P55318 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA3P55318 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC14.66□□□□□ -0.06
FOXA3P55318 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC14.66□□□□□ -0.06
FOXA3P55318 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA3P55318 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA3P55318 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA3P55318 COMP-202ENST00000425807 2292 ntTSL 2 BASIC14.66□□□□□ -0.06
FOXA3P55318 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
FOXA3P55318 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA3P55318 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC14.65□□□□□ -0.06
FOXA3P55318 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA3P55318 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA3P55318 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA3P55318 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA3P55318 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC14.65□□□□□ -0.06
FOXA3P55318 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA3P55318 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA3P55318 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC14.65□□□□□ -0.06
FOXA3P55318 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA3P55318 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA3P55318 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA3P55318 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA3P55318 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC14.65□□□□□ -0.06
FOXA3P55318 RPP21-222ENST00000433076 577 ntTSL 2 BASIC14.65□□□□□ -0.06
FOXA3P55318 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA3P55318 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC14.65□□□□□ -0.06
FOXA3P55318 AC138907.5-202ENST00000569484 235 ntBASIC14.65□□□□□ -0.06
FOXA3P55318 MIR4767-201ENST00000582827 78 ntBASIC14.65□□□□□ -0.06
FOXA3P55318 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
FOXA3P55318 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA3P55318 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA3P55318 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC14.65□□□□□ -0.06
FOXA3P55318 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC14.65□□□□□ -0.06
FOXA3P55318 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC14.65□□□□□ -0.06
FOXA3P55318 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA3P55318 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC14.65□□□□□ -0.06
FOXA3P55318 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA3P55318 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA3P55318 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC14.65□□□□□ -0.06
FOXA3P55318 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA3P55318 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA3P55318 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC14.65□□□□□ -0.06
FOXA3P55318 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA3P55318 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
FOXA3P55318 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC14.65□□□□□ -0.07
FOXA3P55318 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA3P55318 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC14.64□□□□□ -0.07
FOXA3P55318 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA3P55318 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA3P55318 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA3P55318 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA3P55318 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA3P55318 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC14.64□□□□□ -0.07
FOXA3P55318 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC14.64□□□□□ -0.07
FOXA3P55318 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA3P55318 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA3P55318 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC14.64□□□□□ -0.07
FOXA3P55318 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA3P55318 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC14.64□□□□□ -0.07
FOXA3P55318 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC14.64□□□□□ -0.07
FOXA3P55318 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA3P55318 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA3P55318 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA3P55318 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA3P55318 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC14.64□□□□□ -0.07
FOXA3P55318 MPST-208ENST00000628507 698 ntTSL 5 BASIC14.64□□□□□ -0.07
FOXA3P55318 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC14.64□□□□□ -0.07
FOXA3P55318 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA3P55318 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC14.64□□□□□ -0.07
FOXA3P55318 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA3P55318 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC14.64□□□□□ -0.07
FOXA3P55318 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA3P55318 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
FOXA3P55318 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA3P55318 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC14.64□□□□□ -0.07
FOXA3P55318 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms