Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC20.99■□□□□ 0.95
COL4A4P53420 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
COL4A4P53420 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.99■□□□□ 0.95
COL4A4P53420 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC20.99■□□□□ 0.95
COL4A4P53420 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC20.99■□□□□ 0.95
COL4A4P53420 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL4A4P53420 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC20.99■□□□□ 0.95
COL4A4P53420 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC20.99■□□□□ 0.95
COL4A4P53420 TSPY5P-201ENST00000426936 936 ntBASIC20.99■□□□□ 0.95
COL4A4P53420 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC20.99■□□□□ 0.95
COL4A4P53420 CCR12P-201ENST00000446203 998 ntBASIC20.99■□□□□ 0.95
COL4A4P53420 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC20.99■□□□□ 0.95
COL4A4P53420 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC20.99■□□□□ 0.95
COL4A4P53420 AC011298.2-201ENST00000617989 482 ntBASIC20.99■□□□□ 0.95
COL4A4P53420 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC20.99■□□□□ 0.95
COL4A4P53420 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
COL4A4P53420 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
COL4A4P53420 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC20.98■□□□□ 0.95
COL4A4P53420 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.98■□□□□ 0.95
COL4A4P53420 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL4A4P53420 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL4A4P53420 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
COL4A4P53420 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC20.98■□□□□ 0.95
COL4A4P53420 DET1-207ENST00000564406 2315 ntTSL 2 BASIC20.98■□□□□ 0.95
COL4A4P53420 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL4A4P53420 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL4A4P53420 GXYLT1P6-201ENST00000456472 1187 ntBASIC20.98■□□□□ 0.95
COL4A4P53420 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC20.98■□□□□ 0.95
COL4A4P53420 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
COL4A4P53420 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.98■□□□□ 0.95
COL4A4P53420 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL4A4P53420 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL4A4P53420 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL4A4P53420 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC20.98■□□□□ 0.95
COL4A4P53420 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
COL4A4P53420 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
COL4A4P53420 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL4A4P53420 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL4A4P53420 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL4A4P53420 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC20.97■□□□□ 0.95
COL4A4P53420 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC20.97■□□□□ 0.95
COL4A4P53420 AC131212.4-201ENST00000623606 975 ntBASIC20.97■□□□□ 0.95
COL4A4P53420 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
COL4A4P53420 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL4A4P53420 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
COL4A4P53420 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL4A4P53420 DPP3P2-201ENST00000416030 1696 ntBASIC20.97■□□□□ 0.95
COL4A4P53420 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC20.97■□□□□ 0.95
COL4A4P53420 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC20.97■□□□□ 0.95
COL4A4P53420 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL4A4P53420 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL4A4P53420 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL4A4P53420 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL4A4P53420 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COL4A4P53420 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL4A4P53420 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC20.96■□□□□ 0.95
COL4A4P53420 KRT18P16-201ENST00000510337 1294 ntBASIC20.96■□□□□ 0.95
COL4A4P53420 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC20.96■□□□□ 0.95
COL4A4P53420 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
COL4A4P53420 AC010653.2-201ENST00000623505 997 ntBASIC20.96■□□□□ 0.95
COL4A4P53420 AL023973.1-201ENST00000624619 620 ntBASIC20.96■□□□□ 0.95
COL4A4P53420 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.96■□□□□ 0.95
COL4A4P53420 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL4A4P53420 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL4A4P53420 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC20.96■□□□□ 0.95
COL4A4P53420 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL4A4P53420 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL4A4P53420 BX119927.1-201ENST00000636596 1552 ntBASIC20.96■□□□□ 0.95
COL4A4P53420 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC20.96■□□□□ 0.95
COL4A4P53420 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COL4A4P53420 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC20.96■□□□□ 0.95
COL4A4P53420 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC20.96■□□□□ 0.95
COL4A4P53420 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
COL4A4P53420 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
COL4A4P53420 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
COL4A4P53420 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL4A4P53420 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
COL4A4P53420 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL4A4P53420 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
COL4A4P53420 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
COL4A4P53420 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC20.95■□□□□ 0.94
COL4A4P53420 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
COL4A4P53420 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL4A4P53420 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL4A4P53420 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL4A4P53420 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
COL4A4P53420 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
COL4A4P53420 KRT18P38-201ENST00000449496 1282 ntBASIC20.95■□□□□ 0.94
COL4A4P53420 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
COL4A4P53420 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL4A4P53420 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL4A4P53420 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
COL4A4P53420 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC20.95■□□□□ 0.94
COL4A4P53420 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL4A4P53420 AL512408.1-201ENST00000569378 2000 ntBASIC20.94■□□□□ 0.94
COL4A4P53420 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC20.94■□□□□ 0.94
COL4A4P53420 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
COL4A4P53420 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC20.94■□□□□ 0.94
COL4A4P53420 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
COL4A4P53420 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms